View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_high_7 (Length: 231)
Name: NF9551_high_7
Description: NF9551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 44692690 - 44692492
Alignment:
| Q |
17 |
ctattctccacaatccagctaccttcaagcttccccatacatagatttaaccgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcacca |
116 |
Q |
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| T |
44692690 |
ctattctccacaatccagctaccttcaagcttccccatacatagatttaactgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcacca |
44692591 |
T |
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| Q |
117 |
tgagtccacacatgcccctccaaatcctccaataaattatttaacaattgttcctcccacacnnnnnnncgccactccaccaccggcccattattcacc |
215 |
Q |
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| T |
44692590 |
tgagtccacacatgcccctccaaatcctccaataaattatttaacaattgttcctcccacacaaaaaaacgccactccaccaccggcccattattcacc |
44692492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 34866505 - 34866639
Alignment:
| Q |
20 |
ttctccacaatccagctaccttcaagcttccccatacatagatttaaccgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatga |
119 |
Q |
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|||||||||||||| || ||||||| |||| | |||||||||||| ||||| || ||||| || ||||| | | |||| ||||| ||||||||| | | |
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| T |
34866505 |
ttctccacaatccatctcccttcaaacttcgc-atacatagatttcaccgtgaatttcccttcgtcttccatcctccacacccatctgtcttcaccgtta |
34866603 |
T |
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| Q |
120 |
gtccacacatgcccctccaaatcctccaataaatta |
155 |
Q |
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| T |
34866604 |
gaccacacatgcccctccaaatcttccaataaatta |
34866639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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