View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9551_high_9 (Length: 212)
Name: NF9551_high_9
Description: NF9551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 16964670 - 16964483
Alignment:
| Q |
12 |
cagagatcagtgattagtaaaattagtgaatatttcacatnnnnnnnncattataccctttatttttcttccactaaactaaattaaactcctaccacta |
111 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16964670 |
cagagatcagttattagcaaaattagtgaatatttcaaataaaaaaaacattataccctatatttttcttccactaaactaaattaaactcctaccacta |
16964571 |
T |
|
| Q |
112 |
aattaactcctcttgaaccatcataatgctataagttattcttaaaatgactctaccgtaatttatactactatgatgagatataatt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16964570 |
aattaactcctcttgaaccatcataatgctataagttattcttaaaataactctaccataatttatactactatgatgagatataatt |
16964483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University