View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_low_1 (Length: 636)
Name: NF9551_low_1
Description: NF9551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 169 - 617
Target Start/End: Original strand, 42929751 - 42930199
Alignment:
| Q |
169 |
atagcactcgttgtgtttcttgttcggaagctcgcgaggaagaggttgatactcctagttcttctttgttgttagaacaagttagggaggagattgattg |
268 |
Q |
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| T |
42929751 |
atagcactcgttgtgtttcttgttcggaagctcgcgaggaagaggttgatactcctagttcttctttgttgttagaacaagttagggaggagattgattg |
42929850 |
T |
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| Q |
269 |
tgaagatgaagttgaagcttcacaaactcaagcttcaacttcatcttcgtcttcaagtacttaatttaaggttgaggggaatgattttaattatgtatac |
368 |
Q |
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| T |
42929851 |
tgaagatgaagttgaagcttcacaaactcaagcttcaacttcatcttcgtcttcaagtacttaatttaaggttgaggggaatgattttaattatgtatac |
42929950 |
T |
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| Q |
369 |
caaatattagtagtagtgtatcataaagtaacattttttgtttcattatttttcatgttaatttccctcttttgcttacgtatttggttctttgcgctga |
468 |
Q |
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| T |
42929951 |
caaatagtagtagtagtgtatcataaagtaacattttttgtttcattatttttcatgttaatttccctcttttgcttacgtatttggttctttgcgctga |
42930050 |
T |
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| Q |
469 |
gagattcttcacattcacatagttgaatgatattttgaatattaaaatcaaaagtatagtctacatctgtttcaagattgtctgatcttgattgaatgac |
568 |
Q |
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| T |
42930051 |
cagattcttcacattcacatagttgaatgatattttgaatattaaaatcaaaagtatagtttacatctgtttcaagattatctgatcttgactgaatgac |
42930150 |
T |
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| Q |
569 |
catcgatgtctagactcttgactacctgagcgcgaatcttcttttagac |
617 |
Q |
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| T |
42930151 |
catcgatatctagactcttggctacctgagtgcgaatcctcttttagac |
42930199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 42929601 - 42929654
Alignment:
| Q |
19 |
atcatggctatattgttggtgcttttgttgatttattggttggtcttacatttg |
72 |
Q |
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| T |
42929601 |
atcatggctatattgttggtgcttttgttgatttattggttggtcttacatttg |
42929654 |
T |
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