View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_low_10 (Length: 336)
Name: NF9551_low_10
Description: NF9551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 40 - 330
Target Start/End: Complemental strand, 48871976 - 48871686
Alignment:
| Q |
40 |
taacaatgactcttccccccgtaattaattttttgatgctataaatgattggttttgtgccatagtgatgacttttgatatttattcattggatagcata |
139 |
Q |
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| T |
48871976 |
taacaatgactcttccccgcgtaattaattttttgatgctataaatgattggttttgtgccatagtaatgacttttgatatttattcattggatagcata |
48871877 |
T |
|
| Q |
140 |
tgaaaggtcagttgtaattgtagtatcactgttgaggatcatgagttgattcaattttgatgtttcctatgaacataagtcgtaaaattaatttaacaga |
239 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
48871876 |
tgaaaagtcagttgtaattgtagtatcactgttgaggatcgtgagttgattcaattttgatgtttcctatgaacataagtcttaaaattaatttaaaaga |
48871777 |
T |
|
| Q |
240 |
tcatgtgtagttcattaatatgaaattggttttttctgtgtggtttgaaacaaagaaatgacaacaaacgtagttattagtgaccaccaaa |
330 |
Q |
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| T |
48871776 |
tcatgtgtagttcattaatatgaaattggttttttctgtgaggtttgaaacaaataaatgataacaaacgtagttattagtgacccccaaa |
48871686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 40 - 330
Target Start/End: Complemental strand, 48877280 - 48876990
Alignment:
| Q |
40 |
taacaatgactcttccccccgtaattaattttttgatgctataaatgattggttttgtgccatagtgatgacttttgatatttattcattggatagcata |
139 |
Q |
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| T |
48877280 |
taacaatgactcttccccgcgtaattaattttttgatgctataaatgattggttttgtgccatagtaatgacttttgatatttattcattggatagcata |
48877181 |
T |
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| Q |
140 |
tgaaaggtcagttgtaattgtagtatcactgttgaggatcatgagttgattcaattttgatgtttcctatgaacataagtcgtaaaattaatttaacaga |
239 |
Q |
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| T |
48877180 |
tgaaaagtcagttgtaattgtagtatcactgttgaggatcgtgagttgattcaattttgatgtttcctatgaacataagtcttaaaattaatttaaaaga |
48877081 |
T |
|
| Q |
240 |
tcatgtgtagttcattaatatgaaattggttttttctgtgtggtttgaaacaaagaaatgacaacaaacgtagttattagtgaccaccaaa |
330 |
Q |
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| T |
48877080 |
tcatgtgtagttcattaatatgaaattggttttttctgtgaggtttgaaacaaataaatgataacaaacgtagttattagtgacccccaaa |
48876990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 39 - 322
Target Start/End: Complemental strand, 48887670 - 48887380
Alignment:
| Q |
39 |
gtaacaatgactcttccccccgtaattaattttttgatgctataaatgattggttttgtgccatagtgatgacttttgatatttattcattggatagcat |
138 |
Q |
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| T |
48887670 |
gtaacaatgacttttccccc-gtaattaattttttgatgctataaatgattggttttgtgccatagtgatgacttttgatatttattcattggatagcat |
48887572 |
T |
|
| Q |
139 |
atgaaaggtc--agttgtaattgtagtatca----ctgttgaggatcatgagttgattcaattttgatgtttcctatgaacataagtcgtaaaattaatt |
232 |
Q |
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| T |
48887571 |
atgaaaagtctaagttgtaattgtagtatcagtaactgttgaggatcatgagttgattcaattttgatgtttcttatgaacataagtcttaaaattaatt |
48887472 |
T |
|
| Q |
233 |
taacagatcatgtgtagttcattaatatgaaattggttttttctg--tgtggtttgaaacaaagaaatgacaacaaacgtagttattagtga |
322 |
Q |
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| T |
48887471 |
taacagatcatgtgtagttcattaatatgaaattggttttttctgtttgtggtttgaaacaaagaaatgacaacaaacgaagttattagtga |
48887380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 48872416 - 48872355
Alignment:
| Q |
67 |
attttttgatgctataaatgattggttttgtgccatagtgatgacttttgatatttattcat |
128 |
Q |
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| T |
48872416 |
attttttgctgctataaatgattacttttatcccatagtgaagacttttgatctttgttcat |
48872355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 48877720 - 48877659
Alignment:
| Q |
67 |
attttttgatgctataaatgattggttttgtgccatagtgatgacttttgatatttattcat |
128 |
Q |
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| T |
48877720 |
attttttgctgctataaatgattacttttatcccatagtgaagacttttgatctttgttcat |
48877659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 7491013 - 7490962
Alignment:
| Q |
38 |
agtaacaatgactcttccccccgtaattaattttttgatgctataaatgatt |
89 |
Q |
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|||||| ||||||||||||| |||||| |||||||| |||||||||||||| |
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| T |
7491013 |
agtaactatgactcttcccctagtaattcattttttgctgctataaatgatt |
7490962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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