View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_low_14 (Length: 251)
Name: NF9551_low_14
Description: NF9551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 35478850 - 35479091
Alignment:
| Q |
1 |
aaaggtatagtatgtattatcatgacaaaaacataatttaaaatcaaaacatttattttgaattttaatttttgacttgtaatacaggctacactattcc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35478850 |
aaaggtatagtatacattatcatgacaaaaacataatttaaaatcaaaacatttattttgaattttaatttttgacttgtaatacaggctacactattcc |
35478949 |
T |
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| Q |
101 |
aaaggggtggaaagtctttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccatggagatggcaggtagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35478950 |
aaaggggtggaaagtctttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccatggagatggcaggtagca |
35479049 |
T |
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| Q |
201 |
ctctcattttatctttataggtgacgagacattagtctctgc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
35479050 |
ctctcattttatctttataggtgacgagacattagtctctgc |
35479091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 31557178 - 31557257
Alignment:
| Q |
118 |
ttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccatggagatggcaggta |
197 |
Q |
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|||||||||||||||| || ||| | || || || |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31557178 |
ttgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccatggagatggcaggta |
31557257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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