View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_low_17 (Length: 240)
Name: NF9551_low_17
Description: NF9551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 35478562 - 35478787
Alignment:
| Q |
15 |
aggaagagcatgaccaaatcagagcaaagaaaagttgccaagacgtaccattggagtggacagattacaagtcaatggcatttactcaatgtgtaagatc |
114 |
Q |
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| T |
35478562 |
aggaagagcatgaccaaatcagagcaaagaaaagttgccaagacgtaccattggagtggacagattacaagtcaatggcatttactcaatgtgtaagatc |
35478661 |
T |
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| Q |
115 |
attaatattctgctgattcaaaacatcaaaag-taaaacccgtttcacatacnnnnnnngcacaacatattatcttcttatattaataatcttgtccttg |
213 |
Q |
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| T |
35478662 |
attaa-attctgctgattcaaaacatcaaaagaaaaaacccgtttcacatacaaaaaaagcacagcatattatcttcttatattaataatcttgtccttg |
35478760 |
T |
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| Q |
214 |
tttgttctatgtaggttgtgaatgaga |
240 |
Q |
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| T |
35478761 |
tttgttctatgtaggttgtgaatgaga |
35478787 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 31556845 - 31556890
Alignment:
| Q |
66 |
tggagtggacagattacaagtcaatggcatttactcaatgtgtaag |
111 |
Q |
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| T |
31556845 |
tggaatggacagattacaagtcaatgacatttactcaatgtgtaag |
31556890 |
T |
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