View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_low_2 (Length: 630)
Name: NF9551_low_2
Description: NF9551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 16 - 615
Target Start/End: Original strand, 28198143 - 28198740
Alignment:
| Q |
16 |
tggacatcgcaccttcattaaatcataagttccactcaagacaagtaacgttacctcgtatactcaatgtgttacgatgttgagtgaaaacattgtctaa |
115 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
28198143 |
tggacatcgcaccttcactaaatcataagttccactcaagacaagtgatgttacctcgtatactcaatgtcttacgatgttgagtgaagacattgtctaa |
28198242 |
T |
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| Q |
116 |
actcacttgtatggttgctctagtgcaatttgttgaaccactccaatgttgtaggcttcttgaaaagtcccagcagtagtatcaaagtccggttcaactt |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28198243 |
actcacttgtatggttgctctagttcaatttgttgaaccactccaatgttgtaggcttcttgaaaagtcccaacagtagtatcaaagtccggttcaactt |
28198342 |
T |
|
| Q |
216 |
ggtgagggaacagcaaggagtggttcctcaggtgagttaaaaatatcccacattagaatggaagagtagttgttaagaaatataaaataacttaatcttt |
315 |
Q |
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| T |
28198343 |
gatgagggaaca---agaagtggttcctcaagtgagttaaaaatatcccacattagaatggaagagtagttgttaagaaatatataataacttaatcttt |
28198439 |
T |
|
| Q |
316 |
tggatgaaaatatagtatcaaaactcacttgtgtagttgctctaatccaatgtgttggtccactccagtattgtatcctccatcgaaagtcccaacaata |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28198440 |
tggatgaaaatatagtatcaaaactcacttgtgtagttgctctaatccaatgtgttggtccactccagtattgtatcctccatcgaaagtcccaacaata |
28198539 |
T |
|
| Q |
416 |
attacattcaaacaaatttg-ttttaattgttacaagtgtatgtttagtacttcatagttgcatccaccagcctagttgggggcgaagtataagtagaaa |
514 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28198540 |
attacattcaaacaaatttgtttttaattgttacaagtgtatgtttagtacttcatagttgcatccaccagcctagttgggggcgaagtataggtagaaa |
28198639 |
T |
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| Q |
515 |
gttactcttaaatcattcatgatttcaagactttaagattaaatggagaacacacattggattcaactcctttaaagtgaacaactcattttagagtgta |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |
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| T |
28198640 |
gttactcttaaatcattcatgatttcaagactttaagattaaatggagaacacacattgaattcgactcctttaaagtgaacaactcattttagaatgta |
28198739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 615
Target Start/End: Complemental strand, 13866355 - 13866314
Alignment:
| Q |
574 |
gattcaactcctttaaagtgaacaactcattttagagtgtaa |
615 |
Q |
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| T |
13866355 |
gattcaactcctttaaagtgagcaactcactttaaagtgtaa |
13866314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 615
Target Start/End: Original strand, 35732270 - 35732313
Alignment:
| Q |
572 |
tggattcaactcctttaaagtgaacaactcattttagagtgtaa |
615 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
35732270 |
tggatccaactcctttaaagtgaacaactcactttagagtgtaa |
35732313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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