View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_low_5 (Length: 544)
Name: NF9551_low_5
Description: NF9551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 4 - 532
Target Start/End: Complemental strand, 37742312 - 37741788
Alignment:
| Q |
4 |
cttttatggctccaacaccaatcatcaacgacgcaacggtgattagtccatcattggctcctaacatggctgctctaagccattgtgccctttgaaagta |
103 |
Q |
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| T |
37742312 |
cttttatagctccaacaccaatcatcaacgatgcaacggtgattagtccatcattggctcctaacatggctgctctaagccattgtgccctttgaaagta |
37742213 |
T |
|
| Q |
104 |
atcaatgttgttgctctctttttcaattttgagagaattattggcatggatagggatcccaatctcaaaattgtttggtgagatcccattagttcttgct |
203 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||| | | ||||||||||||||||| ||| ||||| ||| | |
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| T |
37742212 |
atcaatgttgttgctctctttttcaactttgagagaactattagcatggatagggatctcaaccacgaaattgtttggtgagataccaatagttattgat |
37742113 |
T |
|
| Q |
204 |
ccaatttgtgaggccatgaaggacaaattagggtacaattataaatcaagtgttgaaatagaaagaaagaggaaattggaatatgatattaagagcttgt |
303 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
37742112 |
ccaaattgtgaggccatgaaggacaaattagggtacaattataaatcaagtgttgaaatataa-----gaggaaattggaatatgatattaagagcttgt |
37742018 |
T |
|
| Q |
304 |
ggagaactcatgcttctaatcaagtgtatttatagctagaggtcgagggggtatgattattcaactttaggtttagtgactgatgtatatggtcacataa |
403 |
Q |
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| T |
37742017 |
ggagaactcatgcttctaatcaagtgtatttatagctagagatcgagggggtatgattattcaactttaggtttagtgactgatgtatatggtcacataa |
37741918 |
T |
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| Q |
404 |
attaatattgataaaggggaggaggtagtgaggagggcaccatctacaagttggtgacaattttcttaatt-aagtaatgattttggcacgcgattaaaa |
502 |
Q |
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| T |
37741917 |
attcatattgataaaggggaggaggtagtgaggagggcaccatctacaagttggtgacaattttcttaattaaagtaatgattttggcacgcaattaaaa |
37741818 |
T |
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| Q |
503 |
attcaatacctaacagtggatctaggtctc |
532 |
Q |
| |
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|||||||||||||||||| ||||||||||| |
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| T |
37741817 |
attcaatacctaacagtgaatctaggtctc |
37741788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 4 - 344
Target Start/End: Original strand, 37752406 - 37752748
Alignment:
| Q |
4 |
cttttatggctccaacaccaatcatcaacgacgcaacggtgattagtccatcattggctcctaacatggctgctctaagccattgtgccctttgaaagta |
103 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37752406 |
cttttatagctccaacaccaatcatcaacgatgcaacggtgattagtccatcattggctcctaacatggctgctctaagccattgtgccctttgaaagta |
37752505 |
T |
|
| Q |
104 |
atcaatgttgttgctctctttttcaattttgagagaattattggcatggatagggatcccaatctcaaaattgtttggtgagatcccattagttcttgct |
203 |
Q |
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| T |
37752506 |
atcaatgttgttgctctctttttcaactttgagagaactattagcatggatagggatctcaacctcgaaattgtttggtgagcttccaatagtttttgtt |
37752605 |
T |
|
| Q |
204 |
ccaatttgtgaggccatgaaggacaaattagggtacaattataaat--caagtgttgaaatagaaagaaagaggaaattggaatatgatattaagagctt |
301 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37752606 |
ccaagttgtgaggccatgaaggacaaattagggtacaattataaatcacaagtgttgaaatagaaagaaagaggaaattggaatatgatattaagagctt |
37752705 |
T |
|
| Q |
302 |
gtggagaactcatgcttctaatcaagtgtatttatagctagag |
344 |
Q |
| |
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|||||||||| ||||||||||| ||| ||||||||||| |||| |
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| T |
37752706 |
gtggagaacttatgcttctaatgaagggtatttatagccagag |
37752748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 344
Target Start/End: Complemental strand, 37749382 - 37749047
Alignment:
| Q |
4 |
cttttatggctccaacaccaatcatcaacgacgcaacggtgattagtccatcattggctcctaacatggctgctctaagccattgtgccctttgaaagta |
103 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37749382 |
cttttatagctccaacaccaatcatcaacgatgcaacggtgattagtccatcattggctcctaacatggctgctctaagccattgtgccctttgaaagta |
37749283 |
T |
|
| Q |
104 |
atcaatgttgttgctctctttttcaattttgagagaattattggcatggatagggatcccaatctcaaaattgtttggtgagatcccattagttcttgct |
203 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||| | | ||||||||||||||||| ||| ||||| ||| | |
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| T |
37749282 |
atcaatgttgttgctctctttttcaactttgagagaactattagcatggatagggatctcaaccacgaaattgtttggtgagataccaatagttattgat |
37749183 |
T |
|
| Q |
204 |
ccaatttgtgaggccatgaaggacaaattagggtacaattataaatcaagtgttgaaatagaaagaaagaggaaattggaatatgatattaagagcttgt |
303 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37749182 |
ccaaattgtgaggccatgaaggacaaattagggtacaattataaatcaagtgttgaaata-----taagaggaaattggaatatgatattaagagcttgt |
37749088 |
T |
|
| Q |
304 |
ggagaactcatgcttctaatcaagtgtatttatagctagag |
344 |
Q |
| |
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|||||||||||||||||||| || | ||||||||||||||| |
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| T |
37749087 |
ggagaactcatgcttctaatgaactatatttatagctagag |
37749047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 476
Target Start/End: Original strand, 37752800 - 37752883
Alignment:
| Q |
395 |
gtcacataaattaatattgata--aaggggaggaggtagtgaggagggcaccatctacaagttggtgacaattttcttaattaa |
476 |
Q |
| |
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||||| |||||||||||||||| |||| |||||||| |||| ||| |||| |||||| |||||||| |||||||||||||||| |
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| T |
37752800 |
gtcacttaaattaatattgatagaaaggagaggaggtggtgaagagagcactatctactagttggtggcaattttcttaattaa |
37752883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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