View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_low_8 (Length: 372)
Name: NF9551_low_8
Description: NF9551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 32541945 - 32541595
Alignment:
| Q |
18 |
atatcggtaaatggctgccacaagcaactacaagaacgcctttatgaatgacatagcgtgtttggaaaatgcaaaaaccaccgtgttgctgttaaaatct |
117 |
Q |
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| T |
32541945 |
atatcggtaaatggctgccacaagcaactacaagaacgcctttatgaatgacatagcgtgtttggaaaatgcaaaaaccaccgtgttgctgttaaaatct |
32541846 |
T |
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| Q |
118 |
cggtgaaatggcatgtattggaatgtgggaaaatgaggcaagaatccgattgaaacagatcgtaagcagttaaattccatttagtttgtttttgccaatg |
217 |
Q |
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| T |
32541845 |
cggtgaaatggcatgtattggaatgtgggaaaatgaggcaagaatccgattgaaacagatcgtaagcagttaaattccatttagtttgtttttgccaatg |
32541746 |
T |
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| Q |
218 |
atgattgtctttggactgagattgtaaatcaaactagagcagtgattgatagaagtcagaagaggtaggagttgaatcaattctttaaaatgatttacta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
32541745 |
atgattgtctttggactgagattgtaaatcaaactagagcagtgattgatagaagtcagaagaggtaggagttgactcaattctgtaaaatgatttacta |
32541646 |
T |
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| Q |
318 |
gtcatatttttgtaaagcttaattactaatacgtgaaagaattcttcttgg |
368 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
32541645 |
gtcatatttttgtaaagcttaattactaatacgtgcacgaattcttcttgg |
32541595 |
T |
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