View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9552_high_15 (Length: 223)
Name: NF9552_high_15
Description: NF9552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9552_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 33654625 - 33654720
Alignment:
| Q |
19 |
aaatcgacacaaacaataactttatgcatcttcaaccaccaccacgaatgaagcttgatgtgatcaagaagcttcaccaacttaggctatttgttt |
114 |
Q |
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| T |
33654625 |
aaatcgacacaaacaataactttatgcgtcttcaaccaccaccacgaatgaagcttgatgtgatcaagaagcttctccaatttagactatttgttt |
33654720 |
T |
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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 33660325 - 33660374
Alignment:
| Q |
28 |
caaacaataactttatgcatcttcaaccaccaccacgaatgaagcttgatg |
78 |
Q |
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| T |
33660325 |
caaacaataactt-atgtatcttcaaccaccacgacgaatgaagcttgatg |
33660374 |
T |
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