View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9552_high_5 (Length: 330)
Name: NF9552_high_5
Description: NF9552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9552_high_5 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 29569128 - 29569430
Alignment:
| Q |
19 |
gtttactctgctgctgcgaagtctgtgagcttattcgactcagtttacactctggagatgtgcatgactgggttagacaaagagaaagcatcggttttct |
118 |
Q |
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| T |
29569128 |
gtttactctgctgctgcgaagtctgtgagcttattcgactcagtttacactctggagatgtgcatgactgggttagacaaagagaaagcatcggttttct |
29569227 |
T |
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| Q |
119 |
acaaagaacagtctagttcagcattcctgatgactgcgaattccggtatcagaaatattcttccggactctgaaataagtgattttgattttgacccgtg |
218 |
Q |
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| T |
29569228 |
acaaagaacagtctagttcagcattcctgatgactgcgaattccggtatcagaaatattcttccggactctgaaataagtgattttgattttgacccgtg |
29569327 |
T |
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| Q |
219 |
tggatattcaatgaattctgtagaaggagctgctgtttctacaattcatgttactccagaagacggtttcagttacgctagctttgaaacatgtgagtat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29569328 |
tggatattcaatgaattctgtagaaggagctgctgtttctacaattcatgttactccagaagacggtttcagttacgctagctttgaaacatgtgagtat |
29569427 |
T |
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| Q |
319 |
aat |
321 |
Q |
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| T |
29569428 |
aat |
29569430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 54 - 305
Target Start/End: Original strand, 4691 - 4942
Alignment:
| Q |
54 |
cgactcagtttacactctggagatgtgcatgactgggttagacaaagagaaagcatcggttttctacaaagaacagtctagttcagcattcctgatgact |
153 |
Q |
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| T |
4691 |
cgactctgtctacacactcgagatgtgcatgactggcttagacagagagaaagcttcggttttcttcaaagatcaatcagattcagctgccaagatgact |
4790 |
T |
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| Q |
154 |
gcgaattccggtatcagaaatattcttccggactctgaaataagtgattttgattttgacccgtgtggatattcaatgaattctgtagaaggagctgctg |
253 |
Q |
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| T |
4791 |
gtgaactctggcatcaggaaaattcttccaaattctgaaatatgtgactttgattttgaaccttgtggttattcaatgaattctgttgagggtgctgctg |
4890 |
T |
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| Q |
254 |
tttctacaattcatgttactccagaagacggtttcagttacgctagctttga |
305 |
Q |
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| T |
4891 |
tttctaccattcatgttactccagaagatgggttcagttatgcaagctttga |
4942 |
T |
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