View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9552_high_7 (Length: 309)
Name: NF9552_high_7
Description: NF9552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9552_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 49993427 - 49993721
Alignment:
| Q |
1 |
aaaatttcactaactctatattagaaggtccaaatttaatttcatgtatcacattaggccttcttataaaacccaaaatcacacccaaaacaaatactat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49993427 |
aaaatttcactaactctatattagaaggtccaaatttaatttcatgtatcacattaggccttcttataaaacccaaaatcacacccaaaacaaatactat |
49993526 |
T |
|
| Q |
101 |
aaaagcagaaggtagtgaaaaaacaatctttttaaatgatctaccactcttttttctctcattcccttcaattgaatcacccaattcttcctcagtttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49993527 |
aaaagcagaaggtagtgaaaaaacaatctttttaaatgatctaccactcttttttctctcattcccttcaattgaatcacccaattcttcctcagtttca |
49993626 |
T |
|
| Q |
201 |
tcaaactcattttccttttcaccagcaccattcacaacaacaacgaagaaaacacatacaatagctaaaatcaacccatcaaatccaaaccactc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49993627 |
tcaaactcattttccttttcaccagcaccattcacaacaacaacaaagaaaacacatacaatagctaaaatcaacccatcaaatccaaaccactc |
49993721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 1875520 - 1875414
Alignment:
| Q |
27 |
ggtccaaatttaatttcatgtatcacattaggccttcttataaaacccaaaatcacacccaaaacaaatactataaaagcagaaggtagtgaaaaaacaa |
126 |
Q |
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|||||||| ||||||||||| | ||||||||||||| |||| || ||||||| ||||| |||||||| | || |||||||||||| |||||||||| || |
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| T |
1875520 |
ggtccaaacttaatttcatgcaccacattaggcctttttatgaatgccaaaataacacctaaaacaaagattacaaaagcagaaggaagtgaaaaaagaa |
1875421 |
T |
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| Q |
127 |
tcttttt |
133 |
Q |
| |
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||||||| |
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| T |
1875420 |
tcttttt |
1875414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 1807928 - 1807812
Alignment:
| Q |
15 |
tctatattagaaggtccaaatttaatttcatgtatcacattaggccttcttataaaacccaaaatcacacccaaaacaaatactataaaagcagaaggta |
114 |
Q |
| |
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||||| ||||| |||||||||||||||||||| | || | | |||||||||||| |||||| | ||||| ||||| ||||||||||||||||| | |
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| T |
1807928 |
tctattttagagggtccaaatttaatttcatgcacaacttcacttcttcttataaaaaccaaaactattcccaatacaaagactataaaagcagaaggaa |
1807829 |
T |
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| Q |
115 |
gtgaaaaaacaatcttt |
131 |
Q |
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||||||||| ||||||| |
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| T |
1807828 |
gtgaaaaaataatcttt |
1807812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 1875349 - 1875276
Alignment:
| Q |
219 |
tcaccagcaccattcacaacaacaacgaagaaaacacatacaatagctaaaatcaacccatcaaatccaaacca |
292 |
Q |
| |
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||||||||||||||||||| |||| ||| ||||||| ||||| ||||||| ||| ||||| ||||||||||| |
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| T |
1875349 |
tcaccagcaccattcacaattacaatgaaacaaacacaaacaatggctaaaaccaatccatctaatccaaacca |
1875276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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