View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9552_low_11 (Length: 328)

Name: NF9552_low_11
Description: NF9552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9552_low_11
NF9552_low_11
[»] chr3 (7 HSPs)
chr3 (16-320)||(19766406-19766710)
chr3 (188-313)||(17682304-17682429)
chr3 (16-157)||(17682164-17682305)
chr3 (53-98)||(19881742-19881787)
chr3 (53-98)||(37982797-37982842)
chr3 (53-98)||(31685508-31685553)
chr3 (53-98)||(53972917-53972962)
[»] chr2 (4 HSPs)
chr2 (16-109)||(32277406-32277499)
chr2 (53-98)||(23348611-23348656)
chr2 (53-98)||(12742133-12742178)
chr2 (53-96)||(18354946-18354989)
[»] chr6 (8 HSPs)
chr6 (180-261)||(15434298-15434379)
chr6 (53-98)||(10092917-10092962)
chr6 (264-320)||(10093072-10093128)
chr6 (121-204)||(33044986-33045069)
chr6 (53-98)||(33045077-33045122)
chr6 (264-320)||(33044897-33044953)
chr6 (121-165)||(10092970-10093014)
chr6 (272-320)||(15434171-15434219)
[»] chr8 (8 HSPs)
chr8 (53-202)||(14677564-14677698)
chr8 (53-98)||(31100503-31100548)
chr8 (264-320)||(5658370-5658426)
chr8 (121-204)||(5658254-5658337)
chr8 (53-98)||(5658201-5658246)
chr8 (121-204)||(31100412-31100495)
chr8 (264-314)||(14677479-14677529)
chr8 (264-320)||(31100323-31100379)
[»] chr4 (5 HSPs)
chr4 (188-261)||(22292289-22292362)
chr4 (121-200)||(29862905-29862984)
chr4 (264-319)||(22292146-22292201)
chr4 (53-97)||(29862993-29863037)
chr4 (233-265)||(7135469-7135501)
[»] chr7 (3 HSPs)
chr7 (53-98)||(1262534-1262579)
chr7 (53-98)||(43071013-43071058)
chr7 (53-98)||(48849413-48849458)
[»] chr5 (3 HSPs)
chr5 (53-98)||(7473120-7473165)
chr5 (53-98)||(30442177-30442222)
chr5 (53-98)||(9044247-9044292)
[»] scaffold0035 (3 HSPs)
scaffold0035 (121-204)||(35559-35642)
scaffold0035 (265-320)||(35676-35731)
scaffold0035 (63-98)||(35516-35551)
[»] scaffold0596 (1 HSPs)
scaffold0596 (53-98)||(1099-1144)
[»] scaffold0045 (3 HSPs)
scaffold0045 (53-98)||(11265-11310)
scaffold0045 (264-320)||(11085-11141)
scaffold0045 (127-196)||(11182-11251)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 19766406 - 19766710
Alignment:
Q  16 ttttccactttcacggttgtcttttctcctcccactccccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgacttccccgccaccgta 115  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19766406 ttttccactttcacagttgtcttttctcctcccactccccttcaccaatgctctagattccgacatcaccttcgccgttgtcgacttccccgccaccgta 19766505  T
Q  116 tgcatcatcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccatggaaatttgca 215  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19766506 tgcatcatcgtatcagctagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccaccccgaataaagagaaagaagccatggaaatttgca 19766605  T
Q  216 atctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagta 315  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  19766606 atctcgattggaagctcctgtcgttgctctctccattcatcaacaatgctctcaaggtaatcgcttttccctttctatgaaatgaattgtgttttgagtt 19766705  T
Q  316 taatc 320  Q
    |||||    
T  19766706 taatc 19766710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 188 - 313
Target Start/End: Original strand, 17682304 - 17682429
Alignment:
Q  188 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcagggtaatcgcttttccct 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  17682304 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcaaggtaatcgtttttccct 17682403  T
Q  288 ttctatgaaatgaattgtgttttgag 313  Q
    ||||||||| ||||||||||||||||    
T  17682404 ttctatgaattgaattgtgttttgag 17682429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 17682164 - 17682305
Alignment:
Q  16 ttttccactttcacggttgtcttttctcctcccactccccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgacttccccgccaccgta 115  Q
    |||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||     
T  17682164 ttttccactttcaatgttgtcttttctcctcccattccccttcaccaatgctctcgattccgacatcacctttgccgttgtcgactttcccaccaccgtc 17682263  T
Q  116 tgcatcatcgtatcagacagacaagcaaaaagaaccgcacaa 157  Q
    |||  ||||||||||| |||||||||||||||||||||||||    
T  17682264 tgcggcatcgtatcagccagacaagcaaaaagaaccgcacaa 17682305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 19881787 - 19881742
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  19881787 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 19881742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 37982797 - 37982842
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  37982797 cccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcg 37982842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 31685508 - 31685553
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  31685508 cccttcaccaatgatatcgattccgacatcaccttcgccgttgtcg 31685553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 53972962 - 53972917
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||    
T  53972962 cccttcaccaatgctctcgattccgacatcactttcgtcgttgtcg 53972917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 32277406 - 32277499
Alignment:
Q  16 ttttccactttcacggttgtcttttctcctcccactccccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgacttccccgcc 109  Q
    ||||||||||||||  ||| |||||||||||||||||||||||||| || |||||||||||||||||| | |||||||||||||||||||||||    
T  32277406 ttttccactttcacctttgccttttctcctcccactccccttcaccgattctctcgattccgacatcatcctcgccgttgtcgacttccccgcc 32277499  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 23348656 - 23348611
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23348656 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 23348611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 12742133 - 12742178
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  12742133 cccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcg 12742178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 18354989 - 18354946
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgt 96  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  18354989 cccttcaccaatgctctcgattccgacatcaccttcgctgttgt 18354946  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 15434379 - 15434298
Alignment:
Q  180 ctccgaataaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaa 261  Q
    ||||||| ||||||||| ||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||    
T  15434379 ctccgaaaaaagagaaataagccatggaaatttgcaatctcaagtgggggctcccatcgttgctctctcccttcatcaacaa 15434298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 10092917 - 10092962
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  10092917 cccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcg 10092962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 10093072 - 10093128
Alignment:
Q  264 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtataatc 320  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  10093072 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatc 10093128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 33045069 - 33044986
Alignment:
Q  121 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccat 204  Q
    ||||||||||  ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||||||||||    
T  33045069 catcgtatcatccaggcaaacaaaaagaacaacacaatttttccacctaaaacctgccactccagataaagagaaagaagccat 33044986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 33045122 - 33045077
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||    
T  33045122 cccttcaccaatgctctcgattccaacatcaccttcgtcgttgtcg 33045077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 33044953 - 33044897
Alignment:
Q  264 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtataatc 320  Q
    |||||| |||||| |||||||| |||||||||| ||||||||||||||||| |||||    
T  33044953 ctctcaaggtaatagcttttccttttctatgaattgaattgtgttttgagtctaatc 33044897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 10092970 - 10093014
Alignment:
Q  121 catcgtatcagacagacaagcaaaaagaaccgcacaatttttcca 165  Q
    ||||||||||| ||| ||| |||||||||| ||||||||||||||    
T  10092970 catcgtatcagccaggcaaacaaaaagaacagcacaatttttcca 10093014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 15434219 - 15434171
Alignment:
Q  272 gtaatcgcttttccctttctatgaaatgaattgtgttttgagtataatc 320  Q
    ||||||||||||||||||||| | | ||||||||||||| ||| |||||    
T  15434219 gtaatcgcttttccctttctacgtattgaattgtgtttttagtctaatc 15434171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 53 - 202
Target Start/End: Complemental strand, 14677698 - 14677564
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgacttccccgccaccgtatgcatcatcgtatcagacagacaagcaaaaagaaccg 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||               ||| |||| ||||||||||| ||| ||| ||||||||||      
T  14677698 cccttcaccaatgctctcgattccgacatcaccttcgccgttgt---------------cgtctgcagcatcgtatcagccaggcaaacaaaaagaacaa 14677614  T
Q  153 cacaatttttccaacaaaaacatgccactccgaataaagagaaagaagcc 202  Q
    ||||||||||||| | ||||| |||||||||  |||||||||||||||||    
T  14677613 cacaatttttccacctaaaacctgccactccatataaagagaaagaagcc 14677564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 31100548 - 31100503
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  31100548 cccttcaccaatgctctcgattccaacatcaccttcgccgttgtcg 31100503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 5658370 - 5658426
Alignment:
Q  264 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtataatc 320  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  5658370 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatc 5658426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 5658254 - 5658337
Alignment:
Q  121 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccat 204  Q
    ||||||||||  ||||||| ||||||||||  ||||| ||||||| | ||||| |||||||||  |||||||||||||||||||    
T  5658254 catcgtatcatccagacaaacaaaaagaacaacacaacttttccacctaaaacctgccactccagataaagagaaagaagccat 5658337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 5658201 - 5658246
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||    
T  5658201 cccttcaccaatgctcttgattccaacatcaccttcgccgttgtcg 5658246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 31100495 - 31100412
Alignment:
Q  121 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccat 204  Q
    ||||||||||  ||| ||| ||||||||||  ||||||||||||| | ||||  |||||||||  |||||||||||||||||||    
T  31100495 catcgtatcatccaggcaaacaaaaagaacaacacaatttttccacctaaaatctgccactccagataaagagaaagaagccat 31100412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 14677529 - 14677479
Alignment:
Q  264 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagt 314  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||| |||||    
T  14677529 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagt 14677479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 31100379 - 31100323
Alignment:
Q  264 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtataatc 320  Q
    |||||| |||||| |||||| | |||||||||| ||||||||||||||||| |||||    
T  31100379 ctctcaaggtaatagctttttcttttctatgaattgaattgtgttttgagtctaatc 31100323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 22292362 - 22292289
Alignment:
Q  188 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaa 261  Q
    ||||||||| ||||||||||||||||||||||| | |||| |||||| |||||||||||||| |||||||||||    
T  22292362 aaagagaaataagccatggaaatttgcaatctcaagtggaggctcccatcgttgctctctccgttcatcaacaa 22292289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 29862984 - 29862905
Alignment:
Q  121 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaag 200  Q
    ||||||||||| ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||||||    
T  29862984 catcgtatcagccaggcaaacaaaaagaacaacacaatttttccacctaaaacctgccactccatataaagagaaagaag 29862905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 22292201 - 22292146
Alignment:
Q  264 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtataat 319  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||| ||| ||||    
T  22292201 ctctcaaggtaatcgcttttccctttctatgtattgaattgtgtttttagtctaat 22292146  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 29863037 - 29862993
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtc 97  Q
    ||||||||| |||||||||||||||||||||| || |||||||||    
T  29863037 cccttcaccgatgctctcgattccgacatcacttttgccgttgtc 29862993  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 7135469 - 7135501
Alignment:
Q  233 ccgtcgttgctctctcccttcatcaacaatgct 265  Q
    |||||||| ||||||||||||||||||||||||    
T  7135469 ccgtcgtttctctctcccttcatcaacaatgct 7135501  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 1262534 - 1262579
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1262534 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 1262579  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 43071058 - 43071013
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43071058 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 43071013  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 48849458 - 48849413
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48849458 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 48849413  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 7473165 - 7473120
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7473165 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 7473120  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 30442222 - 30442177
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  30442222 cccttcaccaatgctctcgattccgacatcaccttggccgttgtcg 30442177  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 9044247 - 9044292
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||    
T  9044247 cccttcaccaatgctctcgatttcgacatcaccttcgtcgttgtcg 9044292  T

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Target: scaffold0035 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 35559 - 35642
Alignment:
Q  121 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccat 204  Q
    ||||||||||| ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||||||||||    
T  35559 catcgtatcagccaggcaaacaaaaagaacaacacaatttttccacctaaaacctgccactccatataaagagaaagaagccat 35642  T

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Target: scaffold0035; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 320
Target Start/End: Original strand, 35676 - 35731
Alignment:
Q  265 tctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtataatc 320  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||| ||||| |||||    
T  35676 tctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtctaatc 35731  T

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Target: scaffold0035; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 35516 - 35551
Alignment:
Q  63 atgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    ||||||||||||| ||||||||||||||||||||||    
T  35516 atgctctcgattctgacatcaccttcgccgttgtcg 35551  T

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Target: scaffold0596 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 1099 - 1144
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  1099 cccttcaccaatgctctcgattccgacatcactttcgccgttgtcg 1144  T

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Target: scaffold0045 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 11310 - 11265
Alignment:
Q  53 cccttcaccaatgctctcgattccgacatcaccttcgccgttgtcg 98  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  11310 cccttcaccaatgctctcgaatccgacatcaccttcgccgttgtcg 11265  T

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Target: scaffold0045; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 11141 - 11085
Alignment:
Q  264 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtataatc 320  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  11141 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatc 11085  T

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Target: scaffold0045; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 11251 - 11182
Alignment:
Q  127 atcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaa 196  Q
    ||||| ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||    
T  11251 atcagccaggcaaacaaaaagaacaacacaatttttccacctaaaacttgccactccagataaagagaaa 11182  T

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