View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9552_low_13 (Length: 321)

Name: NF9552_low_13
Description: NF9552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9552_low_13
NF9552_low_13
[»] chr2 (12 HSPs)
chr2 (43-193)||(44615244-44615394)
chr2 (145-232)||(44749731-44749818)
chr2 (52-189)||(44624626-44624763)
chr2 (1-92)||(44749637-44749728)
chr2 (94-188)||(39472969-39473063)
chr2 (94-186)||(39396853-39396945)
chr2 (76-200)||(39138517-39138641)
chr2 (76-188)||(39152930-39153042)
chr2 (77-189)||(39604188-39604300)
chr2 (85-152)||(39196745-39196812)
chr2 (85-152)||(39223594-39223661)
chr2 (90-189)||(44895305-44895404)
[»] chr5 (2 HSPs)
chr5 (43-200)||(17060484-17060641)
chr5 (85-154)||(33562169-33562238)
[»] chr8 (2 HSPs)
chr8 (87-201)||(44950052-44950169)
chr8 (50-131)||(44730065-44730146)
[»] chr6 (1 HSPs)
chr6 (94-201)||(16114256-16114363)
[»] chr7 (1 HSPs)
chr7 (94-152)||(19808795-19808853)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 43 - 193
Target Start/End: Original strand, 44615244 - 44615394
Alignment:
Q  43 tattaccattgatggaacaagtaaggaatctggcattctatataatttgcgagaatcatcagatccagcaaaaattgttttggatataatgctaaacccc 142  Q
    ||||||||||||||| |||||  |||||  |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||     
T  44615244 tattaccattgatggcacaagcgaggaaattggcattctagataatttgcgagaatcatcagatccagcaaaacttgttttggatataatactaaaccct 44615343  T
Q  143 atgattccactgcctaagaagggtgacaaagctgtgattattgatgaaggc 193  Q
    | |||||||||||||||||| || |||||||| ||||||||||||||||||    
T  44615344 acgattccactgcctaagaaaggagacaaagcggtgattattgatgaaggc 44615394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 44749731 - 44749818
Alignment:
Q  145 gattccactgcctaagaagggtgacaaagctgtgattattgatgaaggccgcatctagactagtactttctatttttgttttcttttg 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44749731 gattccactgcctaagaagggtgacaaagctgtgattattgatgaaggccgcatctagactagtactttctatttttgttttcttttg 44749818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 44624626 - 44624763
Alignment:
Q  52 tgatggaacaagtaaggaatctggcattctatataatttgcgagaatcatcagatccagcaaaaattgttttggatataatgctaaaccccatgattcca 151  Q
    ||||||| ||||| |||||  || ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||    
T  44624626 tgatggagcaagtgaggaaattgacattcttgataatttgcgagaatcatcagatccagcaaaaattgttttggatataatactgaaccccattatccca 44624725  T
Q  152 ctgcctaagaagggtgacaaagctgtgattattgatga 189  Q
    || |||||||| || |||||||||||||||||||||||    
T  44624726 cttcctaagaaaggagacaaagctgtgattattgatga 44624763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44749637 - 44749728
Alignment:
Q  1 ttagatgtatctgcatatttagaaaccaaactggttgatacatattaccattgatggaacaagtaaggaatctggcattctatataatttgc 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  44749637 ttagatgtatctgcatatttagaaaccaaactggttgatacatattaccattgatgaaacaagtaaggaatctgtcattctagataatttgc 44749728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 39473063 - 39472969
Alignment:
Q  94 agaatcatcagatccagcaaaaattgttttggatataatgctaaaccccatgattccactgcctaagaagggtgacaaagctgtgattattgatg 188  Q
    |||||||||||||||||||||| ||||| |||||||||| || ||||| || ||||||| |  ||||||||| ||| | ||||||||||||||||    
T  39473063 agaatcatcagatccagcaaaatttgttctggatataatactgaacccgattattccacggtgtaagaagggagaccatgctgtgattattgatg 39472969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 39396945 - 39396853
Alignment:
Q  94 agaatcatcagatccagcaaaaattgttttggatataatgctaaaccccatgattccactgcctaagaagggtgacaaagctgtgattattga 186  Q
    |||||||||||||||| ||| | |||||||||||||||| | ||||||||| |||||||||  ||||||||| ||||| | |||| |||||||    
T  39396945 agaatcatcagatccatcaagacttgttttggatataatacaaaaccccattattccactgtgtaagaagggagacaatggtgtggttattga 39396853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 39138517 - 39138641
Alignment:
Q  76 cattctatataatttgcgagaatcatcagatccagcaaaaattgttttggatataatgctaaaccccatgattccactgcctaagaagggtgacaaagct 175  Q
    |||||||  |||| ||| |||||||||||||||||||||| |||||||||||||||| |  || || || ||||||| |  |||||| || ||  | |||    
T  39138517 cattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaatggagaacatgct 39138616  T
Q  176 gtgattattgatgaaggccgcatct 200  Q
    |||||||||||||| ||| ||||||    
T  39138617 gtgattattgatgatggctgcatct 39138641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 39152930 - 39153042
Alignment:
Q  76 cattctatataatttgcgagaatcatcagatccagcaaaaattgttttggatataatgctaaaccccatgattccactgcctaagaagggtgacaaagct 175  Q
    ||||||| ||||  ||| ||||||||||||||||||||||||||| ||||||||||| |  ||||| || ||||||| |  |||||| || ||| | |||    
T  39152930 cattctagataacctgcaagaatcatcagatccagcaaaaattgtgttggatataatacagaacccaattattccacggtataagaacggagaccatgct 39153029  T
Q  176 gtgattattgatg 188  Q
    |||||||| ||||    
T  39153030 gtgattatagatg 39153042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 39604188 - 39604300
Alignment:
Q  77 attctatataatttgcgagaatcatcagatccagcaaaaattgttttggatataatgctaaaccccatgattccactgcctaagaagggtgacaaagctg 176  Q
    |||||| ||||| ||| || ||||||||||||| ||||| |||||||||||||||| |  || ||||| |||| |  |  ||||| ||| ||||| ||||    
T  39604188 attctagataatctgcaaggatcatcagatccatcaaaagttgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctg 39604287  T
Q  177 tgattattgatga 189  Q
    | |||||||||||    
T  39604288 taattattgatga 39604300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 39196812 - 39196745
Alignment:
Q  85 taatttgcgagaatcatcagatccagcaaaaattgttttggatataatgctaaaccccatgattccac 152  Q
    |||| ||| |||||||||||||||| ||||| |||||||||| || || || |||||||| |||||||    
T  39196812 taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattccac 39196745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 39223594 - 39223661
Alignment:
Q  85 taatttgcgagaatcatcagatccagcaaaaattgttttggatataatgctaaaccccatgattccac 152  Q
    |||| ||| |||||||||||||||| ||||| |||||||||| || || || |||||||| |||||||    
T  39223594 taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattccac 39223661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 44895404 - 44895305
Alignment:
Q  90 tgcgagaatcatcagatccagcaaaaattgttttggatataatgctaaaccccatgattccactgcctaagaagggtgacaaagctgtgattattgatga 189  Q
    |||||||||||||| |||| |||||| |||||||||||||||| |  ||||| |  || ||||||  |||||||| |||||| | | || ||||||||||    
T  44895404 tgcgagaatcatcaaatcctgcaaaacttgttttggatataatacagaaccctagtatgccactgagtaagaaggatgacaatgatttggttattgatga 44895305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 17060484 - 17060641
Alignment:
Q  43 tattaccattgatggaacaagtaaggaatctggcattctatataatttgcgagaatcatcagatccagcaaaaattgttttggatataatgctaaacccc 142  Q
    |||||||||||||||| ||||| ||||||||| |||||||  |||||||| ||||||||| |||||| ||||||||||||||||| ||||  | ||||||    
T  17060484 tattaccattgatggagcaagtgaggaatctgacattctagttaatttgcaagaatcatcggatccatcaaaaattgttttggatgtaataatgaacccc 17060583  T
Q  143 atgattccactgcctaagaagggtgacaaagctgtgattattgatgaaggccgcatct 200  Q
    || |||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||    
T  17060584 attattccactacctaagaagggagacaaagttgtgattattgatgaaagccgcatct 17060641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 33562169 - 33562238
Alignment:
Q  85 taatttgcgagaatcatcagatccagcaaaaattgttttggatataatgctaaaccccatgattccactg 154  Q
    |||| ||| |||||||||||||||| ||||| |||||||||| || || || ||||||||  ||||||||    
T  33562169 taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccccatctttccactg 33562238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 44950169 - 44950052
Alignment:
Q  87 atttgcgagaatcatcagatccagcaaaaattgttttggatataatgctaaac---cccatgattccactgcctaagaagggtgacaaagctgtgattat 183  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||| ||| ||   |||||  ||||| ||||||||||||| |||||||||||||||||    
T  44950169 atttgcgagaatcatcagatatagcgaaaattgttttggatataatactagacgaccccatatttccattgcctaagaagggagacaaagctgtgattat 44950070  T
Q  184 tgatgaaggccgcatcta 201  Q
    ||||||| ||||| ||||    
T  44950069 tgatgaaagccgcgtcta 44950052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 44730065 - 44730146
Alignment:
Q  50 attgatggaacaagtaaggaatctggcattctatataatttgcgagaatcatcagatccagcaaaaattgttttggatataa 131  Q
    ||||||||||||||| || |||||| || ||||  | |||||||||||||||| |||| ||| ||||| |||||||||||||    
T  44730065 attgatggaacaagtgagaaatctgacactctagtttatttgcgagaatcatcggatctagcgaaaatagttttggatataa 44730146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 16114256 - 16114363
Alignment:
Q  94 agaatcatcagatccagcaaaaattgttttggatataatgctaaaccccatgattccactgcctaagaagggtgacaaagctgtgattattgatgaaggc 193  Q
    ||||||| |||||||| ||| | |||||||||||||||| |  ||||||   | |||||||  ||||||||| ||||| |||||||||||||||||| ||    
T  16114256 agaatcagcagatccatcaagacttgttttggatataatacagaaccccggtactccactgtgtaagaagggagacaatgctgtgattattgatgaatgc 16114355  T
Q  194 cgcatcta 201  Q
    | ||||||    
T  16114356 cacatcta 16114363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 19808795 - 19808853
Alignment:
Q  94 agaatcatcagatccagcaaaaattgttttggatataatgctaaaccccatgattccac 152  Q
    |||||||||||||||| ||||| |||||||||||||||| | |||||| || |||||||    
T  19808795 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccac 19808853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University