View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9552_low_16 (Length: 264)
Name: NF9552_low_16
Description: NF9552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9552_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 38118348 - 38118115
Alignment:
| Q |
20 |
aaagactgaccaaatctccaactagagggtaccacattaatagctgtgcgagtctttccattactgagttggactctgaaggacaggctctgaccattta |
119 |
Q |
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| T |
38118348 |
aaagactgaccaaatctccaactagagggtaccacattaatagctgtacgagtctttccattactgagttggactctgaaggacaggctctgaccattta |
38118249 |
T |
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| Q |
120 |
gatagctcaagctttgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccctttgatccaaactttggagatatcccctgc |
219 |
Q |
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| T |
38118248 |
gatagctcaagctttgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccctttgatccaaactttggagatatcccctgc |
38118149 |
T |
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| Q |
220 |
cccctacattgcttataagcactagttcagaata |
253 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38118148 |
cccctacattgcttataagcactagttcagaata |
38118115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 38165984 - 38165749
Alignment:
| Q |
20 |
aaagactgaccaaatctccaactagagggtaccacattaatagctgtgcgagtctttccattactgagttggactctgaaggacaggctctgaccattta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38165984 |
aaagactgaccaaatctccaactagagggtaccacattaacagccgtgagagtctttccattactgagttggactctgaaggacagactctgaccattta |
38165885 |
T |
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| Q |
120 |
gatagctcaagctttgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccctttgatccaaactttggagatatcccctg- |
218 |
Q |
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| T |
38165884 |
gatagcttaagctttgccagttagcaccccaatttcttgacatagattcccagtttctcattttagaccctttgatccaaactttggagatatcacctgc |
38165785 |
T |
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| Q |
219 |
-ccccctacattgcttataagcactagttcagaata |
253 |
Q |
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| T |
38165784 |
tccccctacattgcttataagcactagttcaaaata |
38165749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 45506370 - 45506553
Alignment:
| Q |
21 |
aagactgaccaaatctccaactagagggtaccacattaatagctgtgcgagtctttccattactgagttggactctgaaggacaggctctgaccatttag |
120 |
Q |
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||||||| ||||||||||| | || ||| | |||||||||||||| |||||||| ||||| ||||||| | ||| || || | ||| |||||||| || |
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| T |
45506370 |
aagactggccaaatctccagttggaaggtgcaacattaatagctgtacgagtcttcccatttttgagttgaattctaaatgataagctttgaccattgag |
45506469 |
T |
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| Q |
121 |
atagctcaagctttgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccctttgatccaaacttt |
204 |
Q |
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| T |
45506470 |
atagcttaggctttgccaattagcaccccaattcattgacattggttcccatttattcttttttgatccttttatccaaacttt |
45506553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 45511830 - 45512013
Alignment:
| Q |
21 |
aagactgaccaaatctccaactagagggtaccacattaatagctgtgcgagtctttccattactgagttggactctgaaggacaggctctgaccatttag |
120 |
Q |
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||||||| ||||||||||| | || ||| | |||||||||||||| |||||||| ||||| ||||||| | ||| || || | ||| |||||||| || |
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| T |
45511830 |
aagactggccaaatctccagttggaaggtgcaacattaatagctgtacgagtcttcccatttttgagttgaattctaaatgataagctttgaccattgag |
45511929 |
T |
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| Q |
121 |
atagctcaagctttgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccctttgatccaaacttt |
204 |
Q |
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| T |
45511930 |
atagcttaggctttgccaattagcaccccaattcattgacattggttcccatttattcttttttgatccttttatccaaacttt |
45512013 |
T |
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