View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9552_low_22 (Length: 241)
Name: NF9552_low_22
Description: NF9552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9552_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 36288872 - 36289095
Alignment:
| Q |
1 |
ccagaaaggatgtgtaaaggtataaacttgactgaatttgatcttatgatacccccaaaagggtaccctatttcatcctttaatctttattctcatgaag |
100 |
Q |
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| T |
36288872 |
ccagaaaggatgtgtaaaggtataaacttgactgaatttgatcttatgatacccccaaaagggtaccctatttcatcctttaatctttattctcatgaag |
36288971 |
T |
|
| Q |
101 |
caaagttccttgctttaaaaagaaattttgaatttggaagtggagttcttttttatgataggctttttattggtttgagcttaagtgatgcaattgggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36288972 |
caaagttccttgctttaaaaagaaattttgaatttggaagtggagttattttttatgataggctttttattggtttgagcttaagtgatgcaatttggtt |
36289071 |
T |
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| Q |
201 |
caaagggtgtagagaaattgaagg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
36289072 |
caaagggtgtagagaaattgaagg |
36289095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 35036605 - 35036387
Alignment:
| Q |
6 |
aaggatgtgtaaaggtataaacttgactgaatttgatcttatgatacccccaaaagggtaccctatttcatcctttaatctttattctcatgaagcaaag |
105 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || | |||||||||||||||||||||| |
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| T |
35036605 |
aaggatgtgtgaaagtataaacttgactgaatttgatcttatgaaacccccaaaagggtaccctaattcatcattcactctttattctcatgaagcaaag |
35036506 |
T |
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| Q |
106 |
ttccttgctttaaaaagaaattttgaatttggaagtggagttcttttttatgataggctttttattggtttgagcttaagtgatgcaattgggttcaaag |
205 |
Q |
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| T |
35036505 |
tatcttgctttaaaaagaaattttgaatttggaagtggggttcttttttatgataggctttttaatggtttgagcttaagtgatgcaattgggttcaaag |
35036406 |
T |
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| Q |
206 |
ggtgtagagaaattgaagg |
224 |
Q |
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|||||||| |||||||||| |
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| T |
35036405 |
ggtgtagacaaattgaagg |
35036387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 35009328 - 35009546
Alignment:
| Q |
6 |
aaggatgtgtaaaggtataaacttgactgaatttgatcttatgatacccccaaaagggtaccctatttcatcctttaatctttattctcatgaagcaaag |
105 |
Q |
| |
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|||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35009328 |
aaggatgtgtgaaggtacaaacttgactgaatttgatcttatgaaacccccaaaagggtaccctatttcatcctttaatctttattatcatgaagcaaag |
35009427 |
T |
|
| Q |
106 |
ttccttgctttaaaaagaaattttgaatttggaagtggagttcttttttatgataggctttttattggtttgagcttaagtgatgcaattgggttcaaag |
205 |
Q |
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|||||||||||||||||| || |||||||||||||| || |||| ||||||||| | | | |||||| |||||||||||||||||||||||||||| |
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| T |
35009428 |
caccttgctttaaaaagaaaattggaatttggaagtgggatttttttctatgataggatctattatggtttaagcttaagtgatgcaattgggttcaaag |
35009527 |
T |
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| Q |
206 |
ggtgtagagaaattgaagg |
224 |
Q |
| |
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| ||||||||||||||| |
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| T |
35009528 |
gtattagagaaattgaagg |
35009546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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