View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9552_low_28 (Length: 238)
Name: NF9552_low_28
Description: NF9552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9552_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 49993441 - 49993219
Alignment:
| Q |
1 |
agttagtgaaattttccaaacatgcatggaaacaaggttttataaagggtactattccacaactacccttgtcaattttgaactcagtgatagctgtttg |
100 |
Q |
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| T |
49993441 |
agttagtgaaattttctaaacatgcatggaaacaaggttttataaagggtactattccacaactacccttgtcaattttgaactcggtgatagctgtttg |
49993342 |
T |
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| Q |
101 |
caaactatcctctgatttatttccaaccaaggacttttcagtaacttcactctcagtgacagttgggttaatgaatcttttgggtggttggtttggtgct |
200 |
Q |
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| T |
49993341 |
caaactatcctctgatttatttccaaccaaggacttttcagtaacttcactttcagtgacagttgggttaatgaatcttttgggtggttggtttggtgct |
49993242 |
T |
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| Q |
201 |
atgccatgctgtcatggtgctgg |
223 |
Q |
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| T |
49993241 |
atgccatgctgtcatggtgctgg |
49993219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 25798267 - 25798088
Alignment:
| Q |
18 |
aaacatgcatggaaacaaggttttataaagggtactattccacaactacccttgtcaattttgaactcagtgatagctgtttgcaaactatcctctgatt |
117 |
Q |
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| T |
25798267 |
aaacatgcatggaagaaaggttttgtcaaaggtgcaattcctcaacttccattgtcaattttgaactctgtcatagctgtttgtaagttatcaacagatc |
25798168 |
T |
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| Q |
118 |
tatttccaaccaaggacttttcagtaacttcactctcagtgacagttgggttaatgaatcttttgggtggttggtttggt |
197 |
Q |
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| T |
25798167 |
tttttccagaaaaggaattttcagttacttcaatttcagtgacagttggactaatgaatttgatcggttgttggtttggt |
25798088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 1875549 - 1875756
Alignment:
| Q |
18 |
aaacatgcatggaaacaaggttttataaagggtactattccacaactacccttgtcaattttgaactcagtgatagctgtttgcaaactatcctctgatt |
117 |
Q |
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|||||||| ||||| |||||||||| || ||||| ||||| ||||| || ||| |||| |||||||| |||||||||||||| || | || |||| |
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| T |
1875549 |
aaacatgcttggaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaatcttgaactctgtgatagctgtttgtaagttgtcaaaggatt |
1875648 |
T |
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| Q |
118 |
tatttccaaccaaggacttttcagtaacttcactctcagtgacagttgggttaatgaatcttttgggtggttggtttggtgctatgccatgctgtcatgg |
217 |
Q |
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| T |
1875649 |
tgtttcctgaaaaggacttttcagtcacttcactttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatgg |
1875748 |
T |
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| Q |
218 |
tgctggtg |
225 |
Q |
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|||||||| |
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| T |
1875749 |
tgctggtg |
1875756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 1807961 - 1808150
Alignment:
| Q |
34 |
aaggttttataaagggtactattccacaactacccttgtcaattttgaactcagtgatagctgtttgcaaactatcctctgatttatttccaaccaagga |
133 |
Q |
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|||||||||| || ||| | ||||||||||| || |||||||| ||||||||||||||||||||||| ||| |||| | ||| | || || | ||| |
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| T |
1807961 |
aaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaactcagtgatagctgtttgtaaattatcaacagatcttttccctgaaaggga |
1808060 |
T |
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| Q |
134 |
cttttcagtaacttcactctcagtgacagttgggttaatgaatcttttgggtggttggtttggtgctatgccatgctgtcatggtgctgg |
223 |
Q |
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| T |
1808061 |
attttcagttacatcaatttcagtgacagttggactaatgaatttagttggttcttggtttggtgctgtgccaacttgtcatggtgctgg |
1808150 |
T |
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