View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9552_low_35 (Length: 212)
Name: NF9552_low_35
Description: NF9552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9552_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 2509529 - 2509712
Alignment:
| Q |
18 |
ctaccttttcatcatttgtatttgtttattcctttttgtttgttatcttataaaaacttgtgatcttgtttcatttttgctctacnnnnnnnnaatgagt |
117 |
Q |
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| T |
2509529 |
ctaccttttcatcatttttatttgtttattcctttttgtttgttatcttataaaaacttgtgatcttgtttcatttttgctctatttttttttaatgagt |
2509628 |
T |
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| Q |
118 |
ttgtagtttccggaaggtaattagtttgtgttgtttgttgcacttgggttgtttaagtgctttgtgaactgtctttctctgctt |
201 |
Q |
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| T |
2509629 |
ttgtagtttcgggaaggtaattagtttgtgttgtttgctgcacttgggttgtttaagtgctttgtgaactgtctttctttgctt |
2509712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 2512794 - 2512871
Alignment:
| Q |
24 |
tttcatcatttgtatttgtttattcctttttgtttgttatcttataaaaacttgtgatcttgtttcatttttgctcta |
101 |
Q |
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| T |
2512794 |
tttcatcatttttatttgttttttcttttcattttgttatctttcaaaaacttgtgatcttttttcatttttgttcta |
2512871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 2512913 - 2512948
Alignment:
| Q |
152 |
ttgttgcacttgggttgtttaagtgctttgtgaact |
187 |
Q |
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| T |
2512913 |
ttgttgcacttgggttgtttaagtgctttgtgaact |
2512948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 2517049 - 2517122
Alignment:
| Q |
29 |
tcatttgtatttgtttattcctttt-tgtttgttatcttataaaaacttgtgatcttgtttcatttttgctcta |
101 |
Q |
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| T |
2517049 |
tcatttttatttgttttttccttttctttttgttatcacacaaaaacttgtgatattgttccatttttgttcta |
2517122 |
T |
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