View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9552_low_5 (Length: 378)
Name: NF9552_low_5
Description: NF9552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9552_low_5 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 126014 - 126372
Alignment:
| Q |
1 |
agtgtattagtgtattgatttgtattatagtatattgtttgttgaatttattgatgtgctgctgtttatttttgggaatttagtgtagtataattgttga |
100 |
Q |
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| T |
126014 |
agtgtattagtgtattgatttgtattatagtatattgtttgttgaatttattgatgtgctgctgtttatttttgggaatttagtgtagtataattgttga |
126113 |
T |
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| Q |
101 |
tgttataatgttgtctaaattttagtgcagtgagagatgtaatttatttgacgttgctatgtttctttgctttttataggaagagtattgtagttgaatt |
200 |
Q |
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| T |
126114 |
tgttataatgttgtctaaattttagtacagtgaga--tgtaatttatttgacgttgctatgtttctttgctttttataggaagaatattgtagttgaatt |
126211 |
T |
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| Q |
201 |
gaaattttgttgttgggtcgccttatggtatgctgttcttttgatgtttataagaggaattgattttctcatgaaagcttcaagtgacttgttatgatta |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
126212 |
gaaattttgttgctgggtcgccttatggtatgctgttcttttgatgtttataagaggaattgattttctcatgaaagcttcaagtgacttgttatgatta |
126311 |
T |
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| Q |
301 |
tggccttttgagattgatccttggaatatcatggtagctagcatggatgaaagatggaact |
361 |
Q |
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| T |
126312 |
tggcctttcgagattgatccttggaatatcatggtagctagcatggatgaaagatggaact |
126372 |
T |
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