View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9552_low_7 (Length: 371)

Name: NF9552_low_7
Description: NF9552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9552_low_7
NF9552_low_7
[»] chr2 (5 HSPs)
chr2 (19-365)||(33026701-33027029)
chr2 (104-365)||(33020357-33020613)
chr2 (104-242)||(33038356-33038494)
chr2 (266-365)||(33038204-33038300)
chr2 (110-241)||(34570232-34570363)
[»] scaffold0044 (1 HSPs)
scaffold0044 (109-238)||(89311-89440)
[»] chr6 (1 HSPs)
chr6 (117-316)||(24417242-24417447)
[»] chr3 (12 HSPs)
chr3 (122-239)||(43992127-43992244)
chr3 (104-242)||(7942649-7942787)
chr3 (122-242)||(2456413-2456533)
chr3 (128-242)||(771269-771383)
chr3 (104-168)||(783572-783636)
chr3 (104-166)||(1438225-1438287)
chr3 (120-162)||(37753116-37753158)
chr3 (105-154)||(37752754-37752802)
chr3 (184-242)||(9561817-9561875)
chr3 (103-168)||(9586930-9586995)
chr3 (123-163)||(956612-956652)
chr3 (101-141)||(37757485-37757525)
[»] scaffold1004 (1 HSPs)
scaffold1004 (122-166)||(2374-2418)
[»] scaffold0760 (1 HSPs)
scaffold0760 (122-166)||(4869-4913)
[»] chr5 (1 HSPs)
chr5 (122-164)||(23644651-23644693)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 33027029 - 33026701
Alignment:
Q  19 acaatgatccaacaagtcactactcactagttattagact-gacaaaacaaataacataaacaaaaattagccatatatatcctgacatagcatctatat 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||                     
T  33027029 acaatgatccaacaagtcactactcactagttattagactagacaaaacaaataacataaacaaaaattatccatatatatcc----------------- 33026947  T
Q  118 cctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatctccaaagtaccatc 217  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33026946 --tgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgtaggaatctccaaagtaccatc 33026849  T
Q  218 tttagaatcgtaaacaaccaacttcgattggtaacattccaactttccaaagtcgatcaacaatttttcatcctcagaaatatataaaacccttgtatag 317  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  33026848 tttggaatcgtaaacaaccaacttcgattggtaacattccaactttccaaagtccatcaacaatatttcatcctcagaaatatataaaacccttgtatag 33026749  T
Q  318 ttacacaacaaaccccgattttccatgtgaggaacacagtataatcta 365  Q
    |||||||||||||||||||| |||||||||||||||| ||| ||||||    
T  33026748 ttacacaacaaaccccgattgtccatgtgaggaacacggtacaatcta 33026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 104 - 365
Target Start/End: Complemental strand, 33020613 - 33020357
Alignment:
Q  104 catagcatctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatc-caaccaccaatgttttgaatcgcaggaat 202  Q
    |||| |||||| ||||| |||||||||||||||||||||   ||||||||||||||||| ||| |  ||| ||||||||||||||||||||| |||||||    
T  33020613 cataccatctacatcctaacattaagaacaaggtgatat---actttcaatgtagacttttggttccatctcaaccaccaatgttttgaatctcaggaat 33020517  T
Q  203 ctccaaagtaccatctttagaatcgtaaacaaccaacttcgattggtaacattccaactttccaaagtcgatcaacaatttttcatcctcagaaatatat 302  Q
    || ||||||||||||||| ||||||||||||||||||||| |||    || ||||||||    |||||| |||| ||||| |||||||||||||||||||    
T  33020516 cttcaaagtaccatctttggaatcgtaaacaaccaacttcaatttaccactttccaactccttaaagtccatcagcaattgttcatcctcagaaatatat 33020417  T
Q  303 aaaacccttgtatagttacacaacaaaccccgattttccatgtgaggaacacagtataatcta 365  Q
    ||| || ||||||||| ||   |||||||||||| |||||||| |||||||| ||| ||||||    
T  33020416 aaagcctttgtatagtgac---acaaaccccgatcttccatgtaaggaacacggtacaatcta 33020357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 33038494 - 33038356
Alignment:
Q  104 catagcatctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatc 203  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  33038494 catagcatctacatcctaacattaagaacaaggtgatatcagactttcaatgtagacttctgggtccatccaaccaccaatgttttgaatctcaggaatc 33038395  T
Q  204 tccaaagtaccatctttagaatcgtaaacaaccaacttc 242  Q
    |||||||||||||| || ||||||||||||| |||||||    
T  33038394 tccaaagtaccatcattggaatcgtaaacaaacaacttc 33038356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 365
Target Start/End: Complemental strand, 33038300 - 33038204
Alignment:
Q  266 aaagtcgatcaacaatttttcatcctcagaaatatataaaacccttgtatagttacacaacaaaccccgattttccatgtgaggaacacagtataatcta 365  Q
    |||||| |||| ||||| |||||||||||||||||||||| || ||||||||  ||   |||||||||||| |||||||| |||||||| ||| ||||||    
T  33038300 aaagtccatcagcaattgttcatcctcagaaatatataaagcctttgtatagcgac---acaaaccccgatcttccatgtaaggaacacggtacaatcta 33038204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 241
Target Start/End: Original strand, 34570232 - 34570363
Alignment:
Q  110 atctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatctccaaa 209  Q
    ||||| ||||| ||||||| || ||||| |||| | ||| |||||||| |||||| |||  ||||||| |   |||||||||||| ||||||||| ||||    
T  34570232 atctacatcctaacattaaaaataaggttatatgaaactctcaatgtatacttctcggtccatccaacaatggatgttttgaatctcaggaatcttcaaa 34570331  T
Q  210 gtaccatctttagaatcgtaaacaaccaactt 241  Q
     ||| || | || || |||||||||| |||||    
T  34570332 atacaatttctaaaaacgtaaacaactaactt 34570363  T

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Target: scaffold0044 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 89440 - 89311
Alignment:
Q  109 catctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatctccaa 208  Q
    |||||| ||||| || |||||||||||||||||||| ||| ||||||||||||| |||||  |||| || |   |||||||||||| ||||||||| |||    
T  89440 catctacatcctaacgttaagaacaaggtgatatcaaactctcaatgtagacttttgggtccatccgacgattgatgttttgaatcacaggaatcttcaa 89341  T
Q  209 agtaccatctttagaatcgtaaacaaccaa 238  Q
    |||||||| ||| ||||| |||||||||||    
T  89340 agtaccattttttgaatcataaacaaccaa 89311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 117 - 316
Target Start/End: Original strand, 24417242 - 24417447
Alignment:
Q  117 tcctgacattaagaacaaggtgatatcagactttcaatgtagacttctggg------tggatccaaccaccaatgttttgaatcgcaggaatctccaaag 210  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||      || |  ||||  |  ||||||  |||| ||||||||| |||      
T  24417242 tcctaacattaagaacaaggtgatatcagactttcaatgtagacttctgggtccagctgcaagcaacgccggatgtttccaatctcaggaatcttcaaga 24417341  T
Q  211 taccatctttagaatcgtaaacaaccaacttcgattggtaacattccaactttccaaagtcgatcaacaatttttcatcctcagaaatatataaaaccct 310  Q
    |||||| ||| |||| |||||||||||||||| ||| ||||| ||||||||    |||| | |||| || || |||||||||| ||||||||||| || |    
T  24417342 taccatttttggaattgtaaacaaccaacttcaatttgtaactttccaactcataaaagccaatcagcagttgttcatcctcaaaaatatataaagcctt 24417441  T
Q  311 tgtata 316  Q
    ||||||    
T  24417442 tgtata 24417447  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 43992244 - 43992127
Alignment:
Q  122 acattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatctccaaagtaccatcttta 221  Q
    ||||||||||||||||||||||| ||| |||| ||| ||||| ||||  |||||||||    ||||||||||| ||||||||| || |||||||| |||     
T  43992244 acattaagaacaaggtgatatcaaactctcaacgtaaacttcagggtctatccaaccattggtgttttgaatctcaggaatcttcagagtaccatttttg 43992145  T
Q  222 gaatcgtaaacaaccaac 239  Q
    |||||||||||| |||||    
T  43992144 gaatcgtaaacagccaac 43992127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 7942787 - 7942649
Alignment:
Q  104 catagcatctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatc 203  Q
    ||||||||| | | ||| ||||||||| ||||||||||||| ||| | |||||||||||| || |  ||||| | |   |||||||||||| || |||||    
T  7942787 catagcatccaaaccctaacattaagagcaaggtgatatcaaactcttaatgtagacttcaggattcatccatctattgatgttttgaatctcatgaatc 7942688  T
Q  204 tccaaagtaccatctttagaatcgtaaacaaccaacttc 242  Q
    | ||||||| | | ||| |||||||||||||||||||||    
T  7942687 ttcaaagtatcgtttttggaatcgtaaacaaccaacttc 7942649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 2456533 - 2456413
Alignment:
Q  122 acattaagaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatctccaaagtaccatcttta 221  Q
    ||||| ||||||||||||||| | ||| |||||||||||||||||||  ||| ||  | | ||||||||||||  ||||| || ||||||||||  |||     
T  2456533 acatttagaacaaggtgatataacactctcaatgtagacttctgggtccatcaaataatcgatgttttgaatcttaggaaacttcaaagtaccacttttg 2456434  T
Q  222 gaatcgtaaacaaccaacttc 242  Q
    |||| ||||||||| ||||||    
T  2456433 gaattgtaaacaactaacttc 2456413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 771269 - 771383
Alignment:
Q  128 agaacaaggtgatatcagactttcaatgtagacttctgggtggatccaaccaccaatgttttgaatcgcaggaatctccaaagtaccatctttagaatcg 227  Q
    ||||||||||||||||| ||| || ||||||||||||||||  ||| ||  | | ||||||||||||  ||||| || ||||||||||  ||| |||| |    
T  771269 agaacaaggtgatatcaaactctctatgtagacttctgggtccatcaaataatcgatgttttgaatcttaggaaacttcaaagtaccacttttggaattg 771368  T
Q  228 taaacaaccaacttc 242  Q
    |||||||| ||||||    
T  771369 taaacaactaacttc 771383  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 783572 - 783636
Alignment:
Q  104 catagcatctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggt 168  Q
    ||||||||| | ||| ||||||||||||||||||||||||| ||| |||| ||||||||| ||||    
T  783572 catagcatcaacatcttgacattaagaacaaggtgatatcaaactctcaacgtagacttccgggt 783636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 1438287 - 1438225
Alignment:
Q  104 catagcatctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgg 166  Q
    ||||||||| | ||| ||||||||| ||||||||||||||| ||| |||| ||||||||||||    
T  1438287 catagcatcaacatcttgacattaaaaacaaggtgatatcaaactctcaacgtagacttctgg 1438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 37753116 - 37753158
Alignment:
Q  120 tgacattaagaacaaggtgatatcagactttcaatgtagactt 162  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  37753116 tgacattaagaacaaggtgatatcagactctcagtgtagactt 37753158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 37752754 - 37752802
Alignment:
Q  105 atagcatctatatcctgacattaagaacaaggtgatatcagactttcaat 154  Q
    |||||||||||||| | ||||||||||||| |||||||||||||||||||    
T  37752754 atagcatctatatcttaacattaagaacaa-gtgatatcagactttcaat 37752802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 9561817 - 9561875
Alignment:
Q  184 tgttttgaatcgcaggaatctccaaagtaccatctttagaatcgtaaacaaccaacttc 242  Q
    ||||||||| | ||||||| | ||||||||||   ||||||||||||||||||||||||    
T  9561817 tgttttgaaactcaggaatattcaaagtaccagtcttagaatcgtaaacaaccaacttc 9561875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 9586930 - 9586995
Alignment:
Q  103 acatagcatctatatcctgacattaagaacaaggtgatatcagactttcaatgtagacttctgggt 168  Q
    |||||||||| | | | |||||| ||||| |||||||||||| ||| |||||||||||||| ||||    
T  9586930 acatagcatcaacaacttgacatcaagaataaggtgatatcaaactctcaatgtagacttccgggt 9586995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 956652 - 956612
Alignment:
Q  123 cattaagaacaaggtgatatcagactttcaatgtagacttc 163  Q
    |||||||||||||||||||||| |||||||| | |||||||    
T  956652 cattaagaacaaggtgatatcaaactttcaaagcagacttc 956612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 37757485 - 37757525
Alignment:
Q  101 tgacatagcatctatatcctgacattaagaacaaggtgata 141  Q
    |||||||||||||| | | ||||||||||||||||||||||    
T  37757485 tgacatagcatctacaccttgacattaagaacaaggtgata 37757525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 2418 - 2374
Alignment:
Q  122 acattaagaacaaggtgatatcagactttcaatgtagacttctgg 166  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||    
T  2418 acattaaaaacaaggtgatattagactctcaatgtagacttctgg 2374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 4913 - 4869
Alignment:
Q  122 acattaagaacaaggtgatatcagactttcaatgtagacttctgg 166  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||    
T  4913 acattaaaaacaaggtgatattagactctcaatgtagacttctgg 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 23644693 - 23644651
Alignment:
Q  122 acattaagaacaaggtgatatcagactttcaatgtagacttct 164  Q
    ||||||||||||||||||||||| |||||||| | ||||||||    
T  23644693 acattaagaacaaggtgatatcaaactttcaacgcagacttct 23644651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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