View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9553_low_14 (Length: 227)

Name: NF9553_low_14
Description: NF9553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9553_low_14
NF9553_low_14
[»] chr6 (12 HSPs)
chr6 (18-220)||(14025595-14025797)
chr6 (18-219)||(14110791-14110992)
chr6 (18-209)||(13932673-13932864)
chr6 (18-212)||(13892553-13892747)
chr6 (18-220)||(14015464-14015668)
chr6 (18-213)||(13874849-13875044)
chr6 (61-220)||(13912137-13912296)
chr6 (18-170)||(14047694-14047846)
chr6 (18-220)||(13472546-13472748)
chr6 (62-170)||(13862423-13862531)
chr6 (18-210)||(14084991-14085183)
chr6 (18-59)||(13928814-13928855)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 14025797 - 14025595
Alignment:
Q  18 gttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatcattgt 117  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  14025797 gttttgggctaaactatcatcacaatggtgcaacaacatcaacatttcaaacaataatctcaaaggattaattccaaatcttcaagtcaaaaatcgttgt 14025698  T
Q  118 gnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtccaaaaacaaattctctgctt 217  Q
            |||||||||||||||||| |||||||| || ||||||||||||||  ||||| | |  |||| |||| ||||||||||||||||||||| ||    
T  14025697 tctgttttatctctttcatcaaatgaatttgaagggcctattccaccatttctaaaaggttctacagttactgatttgtccaaaaacaaattctctgatt 14025598  T
Q  218 ctc 220  Q
    |||    
T  14025597 ctc 14025595  T

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Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 14110992 - 14110791
Alignment:
Q  18 gttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatcattgt 117  Q
    ||||||||||||||||||||||||| ||||||  | |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||     
T  14110992 gttttgggctaaactatcatcacaaaagtgcaggagcatcaacgtttcaaacaataatctcaaaggaataattccaaatcttcaagtaaaaaattattgc 14110893  T
Q  118 gnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaagg-tcccatggttattgatctgtccaaaaacaaattctctgct 216  Q
            ||||||||||| |||||| |||||||| ||||||||||||||||| ||||| |||||| |||||||| |||||||||||||| ||||||| |    
T  14110892 tctagtttatctctttcattaaatgaatttgaagggcccattccaccatttctacaaggttcccat-gttattgacctgtccaaaaacaagttctctgat 14110794  T
Q  217 tct 219  Q
    |||    
T  14110793 tct 14110791  T

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Target: chr6; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 13932864 - 13932673
Alignment:
Q  18 gttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatcattgt 117  Q
    ||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||    
T  13932864 gttttgggctaaactatcatcacaagaatgcaacagcatcaatatttcaaacaataatctcaaaggttcaattccaaatcttcaagtcaaaaatcactgt 13932765  T
Q  118 gnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtccaaaaacaaatt 209  Q
            |||||||||||||||||| |||||||| || |||||| ||||| | |||||| |     |||||||| ||||||||||||||||    
T  13932764 tctcttttatctctttcatcaaatgaatttgaagggcctattccagcatttttacaaggttctgcacttattgatttgtccaaaaacaaatt 13932673  T

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Target: chr6; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 13892553 - 13892747
Alignment:
Q  18 gttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatcattgt 117  Q
    ||||||||||||| |||||| | |||||||||  | ||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||| |||||    
T  13892553 gttttgggctaaattatcattaaaagagtgcagaagcatcaacatttcaaacaataatctcaaaggattaattccaaatcttcaagtcaaaaattattgt 13892652  T
Q  118 gnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtccaaaaacaaattctc 212  Q
            |||||||||||||||||| |||||||| || ||||||||||||||  ||||| | |   |||||||  |||||||||||||||||||    
T  13892653 tctattttatctctttcatcaaatgaatttgaagggcctattccaccatttctaaaaggttctacacttattgacttgtccaaaaacaaattctc 13892747  T

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Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 14015668 - 14015464
Alignment:
Q  18 gttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatca--tt 115  Q
    ||||||||||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| | |  ||    
T  14015668 gttttgggctaaactatcatcacaagagtgctaccgcatcaacatttcaaacaataatctcaaaggttcaattccaaatcttcaagtcaaaattaatttt 14015569  T
Q  116 gtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtccaaaaacaaattctctgc 215  Q
     |        |||||||||||||||||| |||||||| || |||||| ||||||| |||||| |     |||||||| |||||||||||||||||||||     
T  14015568 ttttttttatatctctttcatcaaatgaatttgaagggcctattccagcatttctacaaggttctgaacttattgatttgtccaaaaacaaattctctga 14015469  T
Q  216 ttctc 220  Q
    |||||    
T  14015468 ttctc 14015464  T

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Target: chr6; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 13874849 - 13875044
Alignment:
Q  18 gttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatcattgt 117  Q
    ||||||||||||||||||||||||||||||||| |  |||||| ||||| |||| ||||||||||||| |||||| |||||||| |||||||||||||||    
T  13874849 gttttgggctaaactatcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatcttcatgtaaaaaatcattgt 13874948  T
Q  118 gnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtccaaaaacaaattctct 213  Q
            ||||||| |||||||| | ||||||||  |||||||||||||||||  |||| |  |   ||||||| ||||||||||||||||||||    
T  13874949 tcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttctcagaggttctgtatctattgatttgtccaaaaacaaattctct 13875044  T

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Target: chr6; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 13912296 - 13912137
Alignment:
Q  61 gtttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattc 160  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||        ||| |||||||||||||| |||||||| |||||||    
T  13912296 gtttcaaacaataatctcaaaggcttaattccaaatcttcaagtaaaaaatctttgttctgttttatcactttcatcaaatgaatttgaagggcccattc 13912197  T
Q  161 caccatttctccaaggtcccatggttattgatctgtccaaaaacaaattctctgcttctc 220  Q
    ||||||||||| ||||| | |  ||||||||| ||||||||||||| ||||||| |||||    
T  13912196 caccatttctcaaaggttctacagttattgatttgtccaaaaacaagttctctgattctc 13912137  T

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Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 14047846 - 14047694
Alignment:
Q  18 gttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatcattgt 117  Q
    ||||||||||||||||||||||| |||||||| |||||| ||| ||| |||||||||||||||||||| |||||||||||||||||  |||| ||| |||    
T  14047846 gttttgggctaaactatcatcaccagagtgcagcaacatgaacattttaaacaataatctcaaaggattaattccaaatcttcaagccaaaagtcaatgt 14047747  T
Q  118 gnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttct 170  Q
            |||||||||||||||||| ||||||||  ||| |||||| |||||    
T  14047746 tcttttttatctctttcatcaaatgaatttgaagggtccactccaccttttct 14047694  T

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Target: chr6; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 13472546 - 13472748
Alignment:
Q  18 gttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatcattgt 117  Q
    ||||||| ||||||||||||| ||||| |||   |  |||||| ||||  | || ||||||||||||| |||||||||||||||||||||||||||||||    
T  13472546 gttttggtctaaactatcatcccaagactgctctagaatcaacatttcctataacaatctcaaaggattaattccaaatcttcaagtaaaaaatcattgt 13472645  T
Q  118 gnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtccaaaaacaaattctctgctt 217  Q
            || ||||||||||||||| ||||||||  ||||||||||||||||   |||| |     ||||||||||||||||||| || ||||||| ||    
T  13472646 tcttttttatatctttcatcaaatgaatttgaagggtccattccaccatttctaagaggttcttcatttattgatctgtccaaaaataagttctctgatt 13472745  T
Q  218 ctc 220  Q
    |||    
T  13472746 ctc 13472748  T

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Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 13862423 - 13862531
Alignment:
Q  62 tttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatcattgtgnnnnnnnatctctttcatcaaatgagtttgaaggacccattcc 161  Q
    |||||||||||||||| |||||||||||||||||| |  ||||||||||||| |||        |||||||||||||||||| |||||||| ||||||||    
T  13862423 tttcaaacaataatcttaaaggatcaattccaaatttaaaagtaaaaaatcactgttctcttttatctctttcatcaaatgattttgaagggcccattcc 13862522  T
Q  162 accatttct 170  Q
    |||||||||    
T  13862523 accatttct 13862531  T

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Target: chr6; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 14085183 - 14084991
Alignment:
Q  18 gttttgggctaaactatcatcacaagagtgcaacaacatcaacgtttcaaacaataatctcaaaggatcaattccaaatcttcaagtaaaaaatcattgt 117  Q
    ||||||||| ||||||||||||||||||||||  |  |||||| ||||  |||| ||| |||||||||||||||| ||||| ||  ||| |||| |||||    
T  14085183 gttttgggcaaaactatcatcacaagagtgcaggacaatcaacctttcttacaacaatttcaaaggatcaattccgaatctccacataagaaattattgt 14085084  T
Q  118 gnnnnnnnatctctttcatcaaatgagtttgaaggacccattccaccatttctccaaggtcccatggttattgatctgtccaaaaacaaattc 210  Q
            || ||| ||||||||||| |||||||| |||||||||||||||||   |||| ||||   |||||||||||||||||| ||||||    
T  14085083 tcttttttatttctgtcatcaaatgaatttgaaggtcccattccaccatttcttagaggttccataaatattgatctgtccaaaaataaattc 14084991  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 13928855 - 13928814
Alignment:
Q  18 gttttgggctaaactatcatcacaagagtgcaacaacatcaa 59  Q
    |||||||||||||||||||||||||||||||| || ||||||    
T  13928855 gttttgggctaaactatcatcacaagagtgcagcagcatcaa 13928814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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