View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9553_low_16 (Length: 207)
Name: NF9553_low_16
Description: NF9553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9553_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 51378513 - 51378387
Alignment:
| Q |
72 |
attctcaaatgttacccttgacggtaagcaaacttctacatattcaccaaattgaattacatactttcggaggcactcttaatcgccaaatgctgcacca |
171 |
Q |
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| T |
51378513 |
attctcaaatgttacccttgacggtaagcaaacttctacatattcaccaaattgaattacatactttcggaggcactcttaatcgccaaatgctgcacca |
51378414 |
T |
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| Q |
172 |
atcctcttgaataaatcatctctctgc |
198 |
Q |
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| T |
51378413 |
atcttcttgaataaatcatctctctgc |
51378387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 51378624 - 51378568
Alignment:
| Q |
11 |
acaatcctgcaatatgccaacaatcaactttagccaagcattgaaaaagtatatgcc |
67 |
Q |
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| T |
51378624 |
acaatcctgcaatatgccaacaatcaactttagccaagcattgaaaaagtatatgcc |
51378568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 51791275 - 51791370
Alignment:
| Q |
102 |
aacttctacatattcaccaaattgaattacatactttcggaggcactcttaatcgccaaatgctgcaccaatcctcttgaataaatcatctctctgc |
198 |
Q |
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| T |
51791275 |
aacttcgacatattcaccaaattaaattatatactttcggaggccctcttgctcaccaaatactgtaccaatcc-cttgaacaaatcgtctctctgc |
51791370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 51378672 - 51378638
Alignment:
| Q |
1 |
gacacgactgacaatcctgcaatatgccaacaatc |
35 |
Q |
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| T |
51378672 |
gacacgactgacaatcctgcaatatgccgacaatc |
51378638 |
T |
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