View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9553_low_2 (Length: 451)
Name: NF9553_low_2
Description: NF9553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9553_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 49933085 - 49932646
Alignment:
| Q |
1 |
ctttgaaagcacctatctctctgcatagccgnnnnnnncatttctaaattctaaaatagtaactagccaagcatcccaaacgaaataataagaccacttt |
100 |
Q |
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| T |
49933085 |
ctttgaaagcacctatctctctgcatagccgaaaaaaatatttctaaattctaaaatagtaactagccaagcatcccaaacgaaataataagaccacttt |
49932986 |
T |
|
| Q |
101 |
atcccagataagtagtgttagttagcaaacaaattatgggattctgtccaatcaatgattgttgcatgcataaaaatctgcaacaaaccattagtattag |
200 |
Q |
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| T |
49932985 |
atcccagataagcagtgttagttagcaaacaaattatgggattctgtccaatcaatgattgttgcatgcataaaaatctgcaacaaaccattagtattag |
49932886 |
T |
|
| Q |
201 |
aattactctgaagagtactgtcgactatttttgttgtgccaggatcaattatttgattacttgatcatataaatttgcttatgttgttgctcatttagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49932885 |
aattactctgaagagtactgtcgactatttttgttgtgccaggatcaattatttgattacttgatcatataaatttgcttatgttgttgctcatttagtt |
49932786 |
T |
|
| Q |
301 |
gagttcaataggttatatttttcagaaatatttcactacaagcatattatgatatctcttctgaaaaataaaacatggcagtgaatgcagcaaatcatgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49932785 |
gagttcaataggttatatttttcagaaatatttctctacaagcatattatgatatctcttctgaaaaataaaacatggcagtgaatgcagcaaatcatgt |
49932686 |
T |
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| Q |
401 |
agacaaggacatggagaaaatgctgataaaaccaagtata |
440 |
Q |
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| T |
49932685 |
agacaaggacatggagaaaatgctgataaaaccaagtata |
49932646 |
T |
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