View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9553_low_8 (Length: 241)

Name: NF9553_low_8
Description: NF9553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9553_low_8
NF9553_low_8
[»] chr4 (4 HSPs)
chr4 (91-241)||(4686148-4686298)
chr4 (207-241)||(25414235-25414269)
chr4 (199-241)||(29195108-29195150)
chr4 (199-241)||(39030134-39030176)
[»] chr5 (3 HSPs)
chr5 (209-241)||(14656664-14656696)
chr5 (199-241)||(16173004-16173046)
chr5 (199-241)||(19373252-19373294)
[»] chr3 (2 HSPs)
chr3 (199-241)||(42799768-42799810)
chr3 (199-240)||(26871526-26871567)
[»] chr1 (2 HSPs)
chr1 (199-241)||(15581162-15581204)
chr1 (207-241)||(41470631-41470665)
[»] scaffold0337 (1 HSPs)
scaffold0337 (207-240)||(1774-1807)
[»] scaffold0065 (1 HSPs)
scaffold0065 (207-240)||(12210-12243)
[»] chr8 (1 HSPs)
chr8 (199-240)||(26688878-26688919)
[»] chr6 (1 HSPs)
chr6 (207-240)||(24507558-24507591)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 91 - 241
Target Start/End: Complemental strand, 4686298 - 4686148
Alignment:
Q  91 gaagactgagcaatgcaaaaaatgcatttttccagtgacttaactttgcttctgctgtaaagaagattcaattaagatttaagataagtagattctgttg 190  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4686298 gaagactgagcaatgcaaacaatgaaattttccagtgacttaactttgcttctgctgtaaagaagattcaattaagatttaagataagtagattctgttg 4686199  T
Q  191 gcttcgcctggcctgttggtgttggcttgagaccttggagtttgctcctct 241  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4686198 gcttcgcctggcctgttggtgttggcttgagaccttggagtgtgctcctct 4686148  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 25414269 - 25414235
Alignment:
Q  207 tggtgttggcttgagaccttggagtttgctcctct 241  Q
    ||||||||||||||||||||||||| |||||||||    
T  25414269 tggtgttggcttgagaccttggagtgtgctcctct 25414235  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 29195108 - 29195150
Alignment:
Q  199 tggcctgttggtgttggcttgagaccttggagtttgctcctct 241  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||    
T  29195108 tggcctggtggtgttggcttgggaccttggagtgtgctcctct 29195150  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 39030176 - 39030134
Alignment:
Q  199 tggcctgttggtgttggcttgagaccttggagtttgctcctct 241  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||    
T  39030176 tggcctggtggtgttggcttgggaccttggagtgtgctcctct 39030134  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 14656696 - 14656664
Alignment:
Q  209 gtgttggcttgagaccttggagtttgctcctct 241  Q
    |||||||||||||||||||||||||||||||||    
T  14656696 gtgttggcttgagaccttggagtttgctcctct 14656664  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 16173046 - 16173004
Alignment:
Q  199 tggcctgttggtgttggcttgagaccttggagtttgctcctct 241  Q
    ||||||| | ||||||||||||||||||||||| |||||||||    
T  16173046 tggcctggtagtgttggcttgagaccttggagtgtgctcctct 16173004  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 19373252 - 19373294
Alignment:
Q  199 tggcctgttggtgttggcttgagaccttggagtttgctcctct 241  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||    
T  19373252 tggcctggtggtgttggcttgagaccttggagtgtgctactct 19373294  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 42799810 - 42799768
Alignment:
Q  199 tggcctgttggtgttggcttgagaccttggagtttgctcctct 241  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||    
T  42799810 tggcctggtggtgttggcttgggaccttggagtgtgctcctct 42799768  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 26871567 - 26871526
Alignment:
Q  199 tggcctgttggtgttggcttgagaccttggagtttgctcctc 240  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||    
T  26871567 tggcctggtggtgttggcttgggaccttggagttttctcctc 26871526  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 15581204 - 15581162
Alignment:
Q  199 tggcctgttggtgttggcttgagaccttggagtttgctcctct 241  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||    
T  15581204 tggcctggtggtgttggcttgggaccttggagtgtgctcctct 15581162  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 41470665 - 41470631
Alignment:
Q  207 tggtgttggcttgagaccttggagtttgctcctct 241  Q
    ||||||||||||||||||||||||| |||||||||    
T  41470665 tggtgttggcttgagaccttggagtatgctcctct 41470631  T

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Target: scaffold0337 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 1774 - 1807
Alignment:
Q  207 tggtgttggcttgagaccttggagtttgctcctc 240  Q
    ||||||||||||| ||||||||||||||||||||    
T  1774 tggtgttggcttgggaccttggagtttgctcctc 1807  T

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Target: scaffold0065 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 12210 - 12243
Alignment:
Q  207 tggtgttggcttgagaccttggagtttgctcctc 240  Q
    ||||||||||||| ||||||||||||||||||||    
T  12210 tggtgttggcttgggaccttggagtttgctcctc 12243  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 26688878 - 26688919
Alignment:
Q  199 tggcctgttggtgttggcttgagaccttggagtttgctcctc 240  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||    
T  26688878 tggcctggtggtgttggcttgggaccttggagtgtgctcctc 26688919  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 24507591 - 24507558
Alignment:
Q  207 tggtgttggcttgagaccttggagtttgctcctc 240  Q
    ||||||||||||| ||||||||||||||||||||    
T  24507591 tggtgttggcttgggaccttggagtttgctcctc 24507558  T

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