View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9554_1 (Length: 725)
Name: NF9554_1
Description: NF9554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9554_1 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 32766510 - 32766091
Alignment:
| Q |
1 |
ctgatatcaatatttcaattgaaaatgctgtgcagtaatataatggaatgtggaaattcaaa-tcgataagtaattctcctaacatcttggaatttgtta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
32766510 |
ctgatatcaatatttcaattgaaaatgctgtgcagtaatataatggaatgtggaaattcaaaatcgataagtaattctcctaacatcttggaattcgtta |
32766411 |
T |
|
| Q |
100 |
gttcaaccattgggttctaggtaaccgagtctatttgattgttataatagttctttttcatgaggaattaacaataaacccgtcattgctatgcatgtac |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32766410 |
gttcaaccattgggttctaggtaaccgagtctatttgattgttataatagttctttttcatgaggaattaataataaacccgtcattgctatgcatgtac |
32766311 |
T |
|
| Q |
200 |
aacagcgtttatgttttatcatcatttatgtgacctatgaatcttttgcagatggtactttatgatactcccggtgttctacaagaacaaaggcacaagt |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32766310 |
aacagcgtttatgttttatcatcatttatgtgacctatgaatcttttgcagatggtactttatgatactcccggtgttctacaagaacaaaggcacaagt |
32766211 |
T |
|
| Q |
300 |
tagactcaatgatgatgcaaaatgttcgcagcgctacagttaatgctgattgtgtgttggttctcgtagatgcatgtaaagcgcctgaaaaagtatggtt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32766210 |
tagactcaatgatgatgcaaaatgttcgcagcgctacagttaatgctgattgtgtgttggttctcgtagatgcatgtaaagcgcctgaaaaagtatggtt |
32766111 |
T |
|
| Q |
400 |
tttggtttactagactattg |
419 |
Q |
| |
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|||||||||||||||||||| |
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| T |
32766110 |
tttggtttactagactattg |
32766091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 458 - 725
Target Start/End: Complemental strand, 32766052 - 32765782
Alignment:
| Q |
458 |
agattgatgaagtgttggaagaagccataggaggacacaa---gaaaccccccactctattgattatgaacaagaaggatcttatcaaacctggtgaagt |
554 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32766052 |
agattgatgaagtgttggaagaagccataggaggacacaaagagaaaccccccactctattgataatgaacaagaaggatcttatcaaacctggtgaagt |
32765953 |
T |
|
| Q |
555 |
tgcaaagaaacttgaggttggaatccatttattagtatttaagtgtttataatagcatgtatagcttattcaactggtacagacatgatttttcgtgtgt |
654 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32765952 |
tgcaaagaaacttgaggttggaattcatttattagtatttaagtgtttataatagcatgtatagcttattcaactggtacagacatgatttttcgtgtgt |
32765853 |
T |
|
| Q |
655 |
ttgcagtggtatacaaaatttactgatgttgatgaggttattccagttagtgctaagtatggccatggggt |
725 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32765852 |
ttgcagtggtatacaaaatttactgatgttgatgaggttattccagttagtgctaagtatggccatggggt |
32765782 |
T |
|
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