View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9554_3 (Length: 448)
Name: NF9554_3
Description: NF9554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9554_3 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 40893860 - 40894279
Alignment:
| Q |
1 |
tttaggtctttgtttctggtatcaaatctgaatctctttgatagagttatggttttgtgggttttggttttgagctgactgaatgaactactgtcacccc |
100 |
Q |
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| T |
40893860 |
tttaggtctttgtttttggtatcaaatctgaatctctttgatagacttatggttttgtgggttttggttttgagctgactgaaggaactactgtcacccc |
40893959 |
T |
|
| Q |
101 |
attcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgtttcagggagcttggactattttaggagttgtttgtctg |
200 |
Q |
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| T |
40893960 |
attcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgtttcagggagcttgaactatttcaggagttgtttgtctg |
40894059 |
T |
|
| Q |
201 |
tttcnnnnnnnnctctctcgccatttcagcttcaaatttgcgtttgatttttcatttagggagtgagtgagatcatttgtagtggatgtatgtgtagctt |
300 |
Q |
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| T |
40894060 |
tttcttttttttttctctcgccatttcagcttcaaatttgcgtttgatttttcatttaggaagtgagtgagatcatttgtagtggatgtatgtgtagctt |
40894159 |
T |
|
| Q |
301 |
cttgtggtgtgtctcagaattatgtggtttctgtacatatggagctacaaaaaccatgaatgttgtaatgtttgtggtgtgttaaagttggaattgtttt |
400 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40894160 |
cttgtggtgtgtctcagaattatgtggtttgtgtacatatggagctacaaaaatcatgaatgttgtaatgtttgtggtgtgttaaagttggaattgtttt |
40894259 |
T |
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| Q |
401 |
acaattaggacccaaaagtt |
420 |
Q |
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| T |
40894260 |
acaattaggacccaaaagtt |
40894279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 31621235 - 31621330
Alignment:
| Q |
69 |
tttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt |
164 |
Q |
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| T |
31621235 |
tttgagctgactgaaggaactaccgtccccccattcactcacccatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgttt |
31621330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 36666918 - 36667014
Alignment:
| Q |
69 |
tttgagctgactgaatgaactactgtcacccc-attcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt |
164 |
Q |
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| T |
36666918 |
tttgaactgactgaaggaactaccgtcccccccattcactcactcatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgttt |
36667014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 31621364 - 31621396
Alignment:
| Q |
222 |
catttcagcttcaaatttgcgtttgatttttca |
254 |
Q |
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| T |
31621364 |
catttcagcttcaaatttgcgtttgctttttca |
31621396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 36574895 - 36574828
Alignment:
| Q |
69 |
tttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttc |
136 |
Q |
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| T |
36574895 |
tttgagctgactgaaggaactaccgtccccccattcactcacccatcttcatttctaaattgaatttc |
36574828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 26530441 - 26530346
Alignment:
| Q |
69 |
tttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt |
164 |
Q |
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| T |
26530441 |
tttgagccgactgaaggaactatcgtccccccattcactcacccatcttcatttctaaattgaatttcggattggaggtttgcttgttgtctgttt |
26530346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 36574766 - 36574734
Alignment:
| Q |
222 |
catttcagcttcaaatttgcgtttgatttttca |
254 |
Q |
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| T |
36574766 |
catttcagcttcaaatttgcgtttgctttttca |
36574734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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