View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9554_4 (Length: 376)
Name: NF9554_4
Description: NF9554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9554_4 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 32767140 - 32766769
Alignment:
| Q |
1 |
ttctaatatagctagatgttgcgttactttgttcatgttttttaagggcgtaggatttggaattaaaaggttttatatttttatatgcgtgattgtggaa |
100 |
Q |
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| T |
32767140 |
ttctaatatagctagatgttgctttactttgttcatgttttttaagggggtaggatttggaattaaaaggttttatatttttatatgcgtgattgtggaa |
32767041 |
T |
|
| Q |
101 |
gttgcgagtttttgcctttgttgcgtcacttattatgtgtgtcaaaatgttatgcaggatacgtggctttacttggtaaaccaaatgttgggaagagtac |
200 |
Q |
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| T |
32767040 |
gttgcgagtttttgcctttgttgcgtcacttattatgtgtgtcaaaatgttatgcaggatacgtggctttacttggtaaaccaaatgttgggaagagtac |
32766941 |
T |
|
| Q |
201 |
attggcaaaccaaatggttggccaaaagttgtcaatagttacagataagcctcaaacaacaaggcatcgagttctctgtatatgttctggctcagattat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32766940 |
attggcaaaccaaatggttggccaaaagttgtcaatagttacagataagcctcaaacaacaaggcatcgagttctctgtatatgttctggctcagattat |
32766841 |
T |
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| Q |
301 |
caggtttaatattaagtgctgccttattcttctgtttgattttatcttcaaatgcattatgttgaacccctc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32766840 |
caggtttaatattaagtgctgccttattcttctgtttgattttatcttcaaatgcattatgttgaacccctc |
32766769 |
T |
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