View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9554_5 (Length: 370)
Name: NF9554_5
Description: NF9554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9554_5 |
 |  |
|
| [»] scaffold0361 (1 HSPs) |
 |  |  |
|
| [»] scaffold0168 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 32767141 - 32767333
Alignment:
| Q |
5 |
cagcaacacagatgaaaagtaaaaaatatggaaaaacgcaaacagagaacaaatgatatttgatcacggaattcggccaattgtgcttacatctctgagt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32767141 |
cagcaacacagatgaaaagtaaaaaatacggaaaaacgcaaacagagaacaaatgatatttgatcacggaattcggccaattgtgcttacatctctgagt |
32767240 |
T |
 |
| Q |
105 |
gtagagtgacatgtttggtttcaatgaaagcctagtgtatgtttggtgtcacgtttgggagagccaaaatagattctagagatatagaattga |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32767241 |
gtagagtgacatgtttggtttcaatgaaagcctagtgtatgtttggtgtcacgtttgggagagccaaaattgattctagagatatagaattga |
32767333 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 197 - 370
Target Start/End: Original strand, 32767306 - 32767479
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgtttcgttgcctggccttaagtagaattgatattcccttcaaagttgattatgcttgaagcta |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32767306 |
aaaattgattctagagatatagaattgattttgacatgtttcgttgcctggccttaagtagaattgatattcccttcaaagttgattatgcttgaagcta |
32767405 |
T |
 |
| Q |
297 |
agattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttacacgtgaat |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32767406 |
agattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttacacatgaat |
32767479 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 363
Target Start/End: Original strand, 32927867 - 32927977
Alignment:
| Q |
253 |
agtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaac |
352 |
Q |
| |
|
|||||||||||| || ||| | |||||||| | |||||||||| |||| |||||||||||| |||| | | |||||||| |||||||| ||||||| |
|
|
| T |
32927867 |
agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaac |
32927966 |
T |
 |
| Q |
353 |
tcacttttaca |
363 |
Q |
| |
|
||||||||||| |
|
|
| T |
32927967 |
tcacttttaca |
32927977 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 363
Target Start/End: Complemental strand, 13384729 - 13384654
Alignment:
| Q |
288 |
ttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||| ||| ||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
13384729 |
ttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcacttttaca |
13384654 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 363
Target Start/End: Complemental strand, 26100221 - 26100146
Alignment:
| Q |
288 |
ttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||| |||| ||||||||||||| | || ||| |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
26100221 |
ttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttaca |
26100146 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 8027709 - 8027749
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
8027709 |
aaaattgattatagagatatagaattgattttgaaatgttt |
8027749 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 11038105 - 11038145
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
11038105 |
aaaattgattctagaggtatataattgattttgacatgttt |
11038145 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 14382445 - 14382481
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14382445 |
ttttacactttaatttattgttcaactcacttttaca |
14382481 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 39648307 - 39648267
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
39648307 |
aaaattgattctagagatgtataattgattttgacatgttt |
39648267 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 359
Target Start/End: Original strand, 4950458 - 4950564
Alignment:
| Q |
252 |
aagtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaa |
351 |
Q |
| |
|
||||||||||||| || ||| ||| ||||||| |||||||||| | || |||||| |||||| ||| | | ||||||||||||||||||| ||||| |
|
|
| T |
4950458 |
aagtagaattgattttgcctcaaaaattgattagacttgaagctagcaatc-tagcttatgattcttgaattaatttttacacttaaatttatttttcaa |
4950556 |
T |
 |
| Q |
352 |
ctcacttt |
359 |
Q |
| |
|
|||||||| |
|
|
| T |
4950557 |
ctcacttt |
4950564 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 16972174 - 16972064
Alignment:
| Q |
253 |
agtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaac |
352 |
Q |
| |
|
|||||||||||| || |||||| |||||||| | ||||||||| ||| ||| |||| ||| |||| ||| ||||| || ||||||||||||||| |
|
|
| T |
16972174 |
agtagaattgattttgccttcagagttgattgtatttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaa |
16972075 |
T |
 |
| Q |
353 |
tcacttttaca |
363 |
Q |
| |
|
||||||||||| |
|
|
| T |
16972074 |
tcacttttaca |
16972064 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 35064495 - 35064461
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcactttta |
361 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35064495 |
ttttacacttaaatttattattcaactcactttta |
35064461 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 38868498 - 38868583
Alignment:
| Q |
278 |
ttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||||| ||| | || ||| ||| |||| |||||||| |||||||||| ||||||| |
|
|
| T |
38868498 |
ttgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaatttatagttcaactcaattttaca |
38868583 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 4950408 - 4950448
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
4950408 |
aaaattgattctagatttatacaattgattttgacatgttt |
4950448 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 9695476 - 9695440
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
9695476 |
ttttacactcaaatttattcttcaactcacttttaca |
9695440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 41614767 - 41614807
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
41614767 |
aaaattgattctagaggtataaaattgattttgacttgttt |
41614807 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 361
Target Start/End: Complemental strand, 44141160 - 44141052
Alignment:
| Q |
253 |
agtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaac |
352 |
Q |
| |
|
|||||||||||| || ||| |||| |||||| | ||||||| || |||| ||| ||||||||| ||| ||| ||| |||| ||| ||||| ||||||| |
|
|
| T |
44141160 |
agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataattttatagttcaac |
44141061 |
T |
 |
| Q |
353 |
tcactttta |
361 |
Q |
| |
|
|| |||||| |
|
|
| T |
44141060 |
tcgctttta |
44141052 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 42740977 - 42741062
Alignment:
| Q |
278 |
ttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||||||||| |||| ||| ||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
42740977 |
ttgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaatttactgtccaactcacttttaca |
42741062 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 42774997 - 42774951
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgtttcgttgc |
243 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
42774997 |
aaaattgattctagaggtatagaattgattttgacatgttccgttgc |
42774951 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 44439263 - 44439339
Alignment:
| Q |
287 |
cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||||| ||| |||||||||||| | || ||| ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
44439263 |
cttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactcacttttaca |
44439339 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 37420358 - 37420319
Alignment:
| Q |
198 |
aaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
37420358 |
aaattgattctagaggtgtagaattgattttgacatgttt |
37420319 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 42982570 - 42982629
Alignment:
| Q |
304 |
tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||||||| |||| ||| |||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
42982570 |
tagcttttgattccagaattgatttttacacacaaatttattttacaactcacttttaca |
42982629 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 32307133 - 32307167
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcactttta |
361 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32307133 |
ttttacacttatatttattgttcaactcactttta |
32307167 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 32798544 - 32798510
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcactttta |
361 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32798544 |
ttttacacttatatttattgttcaactcactttta |
32798510 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 30503187 - 30503296
Alignment:
| Q |
256 |
agaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactca |
355 |
Q |
| |
|
|||| |||| || ||| |||| |||||| | |||||||| | ||||| ||||||||||||| |||| ||| |||||||| | |||||| || |||||| |
|
|
| T |
30503187 |
agaaatgattttgcctccaaaattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttttacacatgaatttaaacttgaactca |
30503286 |
T |
 |
| Q |
356 |
cttttacacg |
365 |
Q |
| |
|
||||||||| |
|
|
| T |
30503287 |
tttttacacg |
30503296 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 33019241 - 33019156
Alignment:
| Q |
278 |
ttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||||| || |||| ||| ||| |||| ||||||||| |||||||||||||||||| |
|
|
| T |
33019241 |
ttgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaactcacttttaca |
33019156 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 1976900 - 1976864
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
1976900 |
ttttacactcaaatttattgttgaactcacttttaca |
1976864 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 7632818 - 7632854
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| |
|
|
| T |
7632818 |
ttttacactcaagtttattgttcaactcacttttaca |
7632854 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 13475924 - 13475956
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcacttt |
359 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
13475924 |
ttttacacttaaatttattgttcaaatcacttt |
13475956 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 15928595 - 15928551
Alignment:
| Q |
198 |
aaattgattctagagatatagaattgattttgacatgtttcgttg |
242 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||||||||| |||| |
|
|
| T |
15928595 |
aaattgattctggaggtgtagaattgattttgacatgtttggttg |
15928551 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 16013873 - 16013829
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgtttcgtt |
241 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||| |||||||||||| |
|
|
| T |
16013873 |
aaaatttattctagaggtgtagaattgattttaacatgtttcgtt |
16013829 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 37420240 - 37420196
Alignment:
| Q |
318 |
agaactgacttttacacttaaatttattgttcaactcacttttac |
362 |
Q |
| |
|
|||| ||| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
37420240 |
agaattgatttttacactcaaatttattattcaactcacttttac |
37420196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 37649636 - 37649596
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
37649636 |
aaaattgattcttgaggtatggaattgattttgacatgttt |
37649596 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 40582672 - 40582712
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
40582672 |
aaaattgattctagaggtgtagaattgattttaacatgttt |
40582712 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 43717265 - 43717305
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
43717265 |
aaaattgattctagatgtgtagaattgattttgacatgttt |
43717305 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 363
Target Start/End: Original strand, 34620809 - 34620971
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgtttcgttgcctggccttaagtagaattgatattcccttcaaagttgattatgcttgaagcta |
296 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||||||| ||| ||| | || ||||||| || || ||| | | |||||| | | |||||||| |
|
|
| T |
34620809 |
aaaattgattctaaaggtgtagaattgattttgacatgtttggtt-ccta---taaactagaattaattttgcctccggaattgattctacatgaagcta |
34620904 |
T |
 |
| Q |
297 |
agattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
| ||||||||| |||||| |||| ||| ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
34620905 |
gaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactcacttttaca |
34620971 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 363
Target Start/End: Original strand, 34748246 - 34748408
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgtttcgttgcctggccttaagtagaattgatattcccttcaaagttgattatgcttgaagcta |
296 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||||||| ||| ||| | || ||||||| || || ||| | | |||||| | | |||||||| |
|
|
| T |
34748246 |
aaaattgattctaaaggtgtagaattgattttgacatgtttggtt-ccta---taaactagaattaattttgcctccggaattgattctacatgaagcta |
34748341 |
T |
 |
| Q |
297 |
agattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
| ||||||||| |||||| |||| ||| ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
34748342 |
gaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactcacttttaca |
34748408 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 1485204 - 1485146
Alignment:
| Q |
305 |
agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||||||| |||| ||| ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
1485204 |
agcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttaca |
1485146 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 434345 - 434235
Alignment:
| Q |
255 |
tagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactc |
354 |
Q |
| |
|
|||||||||| || | |||| | |||||||| |||||| ||| ||| ||||||||||||| |||| ||| ||||| || |||||||| |||||||| |
|
|
| T |
434345 |
tagaattgatttttctttcataattgattatatttgaagttaaaattaatagcttttgattttagaattgatttttatacataaatttaaatttcaactc |
434246 |
T |
 |
| Q |
355 |
acttttacacg |
365 |
Q |
| |
|
||||||||||| |
|
|
| T |
434245 |
acttttacacg |
434235 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 31305905 - 31305847
Alignment:
| Q |
305 |
agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||||||| |||| ||| || |||||| |||||||||| |||||||||||||||| |
|
|
| T |
31305905 |
agcttttgattctagaattgatttatacactcaaatttattgatcaactcacttttaca |
31305847 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 34027475 - 34027417
Alignment:
| Q |
305 |
agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
34027475 |
agcttttgattctagaattgatttttacactcaaatttattattcaactcactcttaca |
34027417 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 30927043 - 30927099
Alignment:
| Q |
278 |
ttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacac |
334 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| |||| ||| |||||||| |
|
|
| T |
30927043 |
ttgattatacttgaagctaagattcgtagcttttgattatagaattgatttttacac |
30927099 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 33997121 - 33997161
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
33997121 |
aaaattgattctagagatttagaatcgattttgacatgttt |
33997161 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 4910908 - 4910993
Alignment:
| Q |
278 |
ttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||| | |||||||||| |||| ||||||||||||| |||| ||| ||| ||| |||||||| |||| ||||||||||||| |
|
|
| T |
4910908 |
ttgattctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttaca |
4910993 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 25195870 - 25195930
Alignment:
| Q |
298 |
gattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcactt |
358 |
Q |
| |
|
|||| |||||||||||||| |||| ||| || ||||| |||||||| ||||||||||||| |
|
|
| T |
25195870 |
gatttatagcttttgattctagaattgaattgtacacacaaatttatagttcaactcactt |
25195930 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 363
Target Start/End: Complemental strand, 32888985 - 32888957
Alignment:
| Q |
335 |
ttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32888985 |
ttaaatttattgttcaactcacttttaca |
32888957 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 4243414 - 4243472
Alignment:
| Q |
305 |
agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
4243414 |
agcttttgattctagaattgatttttacactcaaatttattgttctactcacttttaca |
4243472 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 32100341 - 32100377
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32100341 |
ttttacactcaaatttattgttcaactcacttttaca |
32100377 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 19067342 - 19067381
Alignment:
| Q |
198 |
aaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
19067342 |
aaattgattccagagatataaaattgattttgacatgttt |
19067381 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 55085164 - 55085125
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgtt |
236 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
55085164 |
aaaattgattctagaggtatagaattgattttaacatgtt |
55085125 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 10185221 - 10185279
Alignment:
| Q |
305 |
agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||||||| | || ||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
10185221 |
agcttttgattctaaaattgatctttacactcaaatttattgtttaactcacttttaca |
10185279 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 32818480 - 32818370
Alignment:
| Q |
253 |
agtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaac |
352 |
Q |
| |
|
|||||||||||| || ||| || | |||||| | ||||||||| ||| ||||||||||||| |||| ||| |||| ||| |||||||| ||||||| |
|
|
| T |
32818480 |
agtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaac |
32818381 |
T |
 |
| Q |
353 |
tcacttttaca |
363 |
Q |
| |
|
| ||||||||| |
|
|
| T |
32818380 |
taacttttaca |
32818370 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 49138997 - 49138952
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgtttcgttg |
242 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |||||||||| |||| |
|
|
| T |
49138997 |
aaaattgattctagaggtgtagaattgattctgacatgtttggttg |
49138952 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 50358176 - 50358139
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatg |
234 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
50358176 |
aaaattgattctagaggtgtagaattgattttgacatg |
50358139 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 35995151 - 35995187
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacat |
233 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |
|
|
| T |
35995151 |
aaaattgattctagagttgtagaattgattttgacat |
35995187 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 361
Target Start/End: Complemental strand, 50061738 - 50061630
Alignment:
| Q |
253 |
agtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaac |
352 |
Q |
| |
|
|||||||||||| || ||| |||| |||||| | ||||||| || |||| ||| ||||||||| ||| ||| ||| |||| ||| ||||| ||||||| |
|
|
| T |
50061738 |
agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataattttatggttcaac |
50061639 |
T |
 |
| Q |
353 |
tcactttta |
361 |
Q |
| |
|
|| |||||| |
|
|
| T |
50061638 |
tcgctttta |
50061630 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 46853592 - 46853534
Alignment:
| Q |
305 |
agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||||||| |||| ||| ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
46853592 |
agcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttaca |
46853534 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 363
Target Start/End: Original strand, 36302157 - 36302268
Alignment:
| Q |
252 |
aagtagaattgatattcccttcaaagttgattatgcttgaagcta-agattcatagcttttgattcgagaactgacttttacacttaaatttattgttca |
350 |
Q |
| |
|
||||||||||||| || |||||| |||||||| | ||||||||| ||||| || |||||||| |||| ||| ||| ||||||||||||||||||| |
|
|
| T |
36302157 |
aagtagaattgattttgccttcagagttgattctatttgaagctagagattgg-agattttgattttagaattgattttagcacttaaatttattgttca |
36302255 |
T |
 |
| Q |
351 |
actcacttttaca |
363 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36302256 |
actcacttttaca |
36302268 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 35264469 - 35264411
Alignment:
| Q |
305 |
agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||||||| |||| ||| ||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
35264469 |
agcttttgattctagaattgattttaacacttaaatttattgttcaagtcatttttaca |
35264411 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 37335093 - 37335036
Alignment:
| Q |
304 |
tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcactttta |
361 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
37335093 |
tagcttttgattctagaattgatttttacacttgaattcattgttcaactcattttta |
37335036 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 3845274 - 3845234
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
3845274 |
aaaattgattctagaggtgtagaattgattttgacatgttt |
3845234 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 52364060 - 52364136
Alignment:
| Q |
287 |
cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||||| |||| |||||||||||||| | || ||| ||| | || |||||||| |||||||||||||||||| |
|
|
| T |
52364060 |
cttgaagctatgatttatagcttttgattctataattgattttcaaacataaatttacagttcaactcacttttaca |
52364136 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 52925773 - 52925727
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgtttcgttgc |
243 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||||| ||||| |
|
|
| T |
52925773 |
aaaattgattctagaggtgtataattgattttgacatgtttggttgc |
52925727 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 21007803 - 21007758
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgtttcgttg |
242 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||||||||||| |||| |
|
|
| T |
21007803 |
aaaattgattttaaagatatataattgattttgacatgtttagttg |
21007758 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 35058388 - 35058445
Alignment:
| Q |
305 |
agcttttgattcgagaactgacttttacacttaaat-ttattgttcaactcactttta |
361 |
Q |
| |
|
|||||||||||| |||| ||| ||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
35058388 |
agcttttgattctagaattgattttaacactcaaatattattgttcaactcactttta |
35058445 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 27266830 - 27266794
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
27266830 |
ttttacactcaaatttattgttcaactaacttttaca |
27266794 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 33792073 - 33792005
Alignment:
| Q |
296 |
aagattcatagcttttgattcgagaactgacttttacacttaaatttattg-ttcaactcacttttaca |
363 |
Q |
| |
|
||||||||||| |||||||| | || ||| |||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
33792073 |
aagattcatagtttttgattttataattgatttttacacataaatttattgtttaaactcacttttaca |
33792005 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 37703148 - 37703184
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
37703148 |
ttttacactcaaatttattgttcaattcacttttaca |
37703184 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 51285579 - 51285655
Alignment:
| Q |
287 |
cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||||| | ||| |||||||||||| |||| ||| |||| |||| |||||| ||||| ||| | |||||||| |
|
|
| T |
51285579 |
cttgaagctaaaaatcacagcttttgattctagaattgatttttgcactcaaatttgttgtttaacccgcttttaca |
51285655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 363
Target Start/End: Complemental strand, 598105 - 597946
Alignment:
| Q |
199 |
aattgattctagagatatagaattgattttgacatgtttcgttgcctggccttaagtagaattgatattcccttcaaagttgattatgcttgaagctaag |
298 |
Q |
| |
|
|||||||||||||| | | |||||||||||||||| ||| ||| ||| || |||| ||||| ||||| || || | |||||| | ||||||||||| |
|
|
| T |
598105 |
aattgattctagaggtgtggaattgattttgacatttttagtt-cct---ctaaagtggaatttatattggctgcagaattgattctacttgaagctaaa |
598010 |
T |
 |
| Q |
299 |
attcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||| ||||||| ||||| | || ||| | || |||| ||||||||||||||||||||||||||| |
|
|
| T |
598009 |
attg-tagctttcgattctataattgattcttgcactaaaatttattgttcaactcacttttaca |
597946 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 30182404 - 30182311
Alignment:
| Q |
254 |
gtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgtt |
348 |
Q |
| |
|
||||||||||| |||||| |||| |||||| | ||||||||||| | | ||||||||||||| |||| | | ||||||||| |||||||||||| |
|
|
| T |
30182404 |
gtagaattgat-ttccctccaaaattgattctacttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaatttattgtt |
30182311 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 40491558 - 40491663
Alignment:
| Q |
258 |
aattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcact |
357 |
Q |
| |
|
||||||| || |||||| | |||| | | ||||||| |||| || ||||||||||||| |||| |||||||||||| ||||||| ||| |||||||| |
|
|
| T |
40491558 |
aattgattttgccttcagaattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcact |
40491657 |
T |
 |
| Q |
358 |
tttaca |
363 |
Q |
| |
|
|||||| |
|
|
| T |
40491658 |
tttaca |
40491663 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 38123810 - 38123770
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
38123810 |
aaaattgattctagagatgtagaattgattttaacatgttt |
38123770 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 45004908 - 45004948
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
45004908 |
aaaattgattctagaggtgtagaattgattttgacatgttt |
45004948 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 24546960 - 24547027
Alignment:
| Q |
35 |
gaaaaacgcaaacagagaacaaatgatatttgatcacggaattcggccaattgtgcttacatctctga |
102 |
Q |
| |
|
|||||||||||| |||||| | ||||||||||||| |||| ||||||||| |||| || |||||||| |
|
|
| T |
24546960 |
gaaaaacgcaaatagagaaaacatgatatttgatctcggagttcggccaagtgtgtctatatctctga |
24547027 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 38123725 - 38123666
Alignment:
| Q |
304 |
tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||| | |||| |||| ||| ||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
38123725 |
tagcttctaattctagaattgatttttacactcaaatttattggtcaactcacttttaca |
38123666 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 18030703 - 18030661
Alignment:
| Q |
60 |
atatttgatcacggaattcggccaattgtgcttacatctctga |
102 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
18030703 |
atatttgatcatggagttcggccaattgtgcttacgtctctga |
18030661 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 41788245 - 41788287
Alignment:
| Q |
201 |
ttgattctagagatatagaattgattttgacatgtttcgttgc |
243 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
41788245 |
ttgattctagaaatatagaattgattttggcatgtttggttgc |
41788287 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 26737763 - 26737722
Alignment:
| Q |
48 |
agagaacaaatgatatttgatcacggaattcggccaattgtg |
89 |
Q |
| |
|
|||||||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
26737763 |
agagaacacacgatatttgatcacggagttcggccaattgtg |
26737722 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 32938724 - 32938687
Alignment:
| Q |
325 |
acttttacacttaaatttattgttcaactcacttttac |
362 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
32938724 |
acttttagacttaaatttattgttcaactcagttttac |
32938687 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 3043166 - 3043120
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgtttcgttgc |
243 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||| ||||| |
|
|
| T |
3043166 |
aaaattgattctagaggtgtagaattgattttgacatgtttagttgc |
3043120 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 13224780 - 13224740
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
13224780 |
aaaattgattctagagatgtataattgattttgacatgttt |
13224740 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 15368166 - 15368204
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgt |
235 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
15368166 |
aaaattgattctagatatgtagaattgattttgacatgt |
15368204 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 37886079 - 37886037
Alignment:
| Q |
322 |
ctgacttttacacttaaatttattgttcaactcacttttacac |
364 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
37886079 |
ctgatttttacattgaaatttattgttcaactcacttttacac |
37886037 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 11911971 - 11911926
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgtttcgttg |
242 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| ||||| |||| |
|
|
| T |
11911971 |
aaaattgattctagagatgtaaaattgattttgacttgtttagttg |
11911926 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 39513636 - 39513587
Alignment:
| Q |
35 |
gaaaaacgcaaacagagaacaaatgatatttgatcacggaattcggccaa |
84 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||| |||||| ||||| |
|
|
| T |
39513636 |
gaaaaacgcaaacagagaacaaacaagatttgatcacagaattcagccaa |
39513587 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 7925435 - 7925467
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcacttt |
359 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
7925435 |
ttttacactcaaatttattgttcaactcacttt |
7925467 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 361
Target Start/End: Original strand, 9818734 - 9818818
Alignment:
| Q |
278 |
ttgattatgcttgaagctaagattcatagcttttgattcgagaactga-cttttacacttaaatttattgttcaactcactttta |
361 |
Q |
| |
|
|||||| | |||||||||| |||| ||||||||||||| |||| ||| ||||| || |||||||| |||||||||||||||| |
|
|
| T |
9818734 |
ttgattctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcactttta |
9818818 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 10898770 - 10898806
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10898770 |
ttttacacacaaatttattgttcaactcacttttaca |
10898806 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 14670941 - 14670981
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
14670941 |
aaaattgattcaagaggtatagaattgattttaacatgttt |
14670981 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 39097188 - 39097232
Alignment:
| Q |
198 |
aaattgattctagagatatagaattgattttgacatgtttcgttg |
242 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||||||||| |||| |
|
|
| T |
39097188 |
aaattgattatagaggtgtagaattgattttgacatgtttggttg |
39097232 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 213594 - 213537
Alignment:
| Q |
306 |
gcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||||| |||| ||| ||||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
213594 |
gcttttgattctagaattgatttttaaactcaaatttgttgttcaactcacttttaca |
213537 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 7524122 - 7524198
Alignment:
| Q |
287 |
cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||| || |||| |||||||||||| |||| ||| |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
7524122 |
cttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcacttttaca |
7524198 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 8381907 - 8381947
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgttt |
237 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
8381907 |
aaaattgattctagaggtataaaattgattttgacatgttt |
8381947 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 358
Target Start/End: Complemental strand, 32088713 - 32088580
Alignment:
| Q |
219 |
aattgattttgacatgtttcgttgcctggccttaagtagaattgatattcccttcaaagttgattatg-cttgaagctaagattcatagcttttgattcg |
317 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||| |||| | |||| |||||| | |||||||||| |||| ||||||||||| |
|
|
| T |
32088713 |
aattgattttgacatgtttggttgct----ctcaagtagaattgattttcc-tacaaaattgattctaacttgaagctaggatttcgagcttttgatt-- |
32088621 |
T |
 |
| Q |
318 |
agaactgacttttacacttaaatttattgttcaactcactt |
358 |
Q |
| |
|
| || ||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
32088620 |
aaaagtgatttttacactgaaatttattgttcaactcactt |
32088580 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 3016188 - 3016247
Alignment:
| Q |
304 |
tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||||||| |||| ||| ||||||| |||||||| |||||||||||||||||| |
|
|
| T |
3016188 |
tagcttttgattctagaattgatgtttacacataaatttacggttcaactcacttttaca |
3016247 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 10324997 - 10324938
Alignment:
| Q |
304 |
tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||||||| | || ||| ||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
10324997 |
tagcttttgattctataattgatttttacactcaaatttattgttatactcacttttaca |
10324938 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 362
Target Start/End: Original strand, 11049259 - 11049334
Alignment:
| Q |
287 |
cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttac |
362 |
Q |
| |
|
|||||||||| |||| ||||||||||||| | || ||| |||||||| |||||||| |||||| |||||||||| |
|
|
| T |
11049259 |
cttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcacttttac |
11049334 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 362
Target Start/End: Complemental strand, 28287412 - 28287337
Alignment:
| Q |
287 |
cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttac |
362 |
Q |
| |
|
|||||||| | |||| |||||||||||| |||| ||| ||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
28287412 |
cttgaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgttcaactaacttttac |
28287337 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 37131860 - 37131903
Alignment:
| Q |
200 |
attgattctagagatatagaattgattttgacatgtttcgttgc |
243 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
37131860 |
attgattctagaggtatagaattgattttggcatgtttggttgc |
37131903 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 361
Target Start/End: Complemental strand, 7790753 - 7790644
Alignment:
| Q |
252 |
aagtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaa |
351 |
Q |
| |
|
||||| |||||||||| ||| | | |||||| | ||||||| || |||| ||| ||| ||||| | || ||| |||||||| ||||||||||||||| |
|
|
| T |
7790753 |
aagtataattgatattgtctttagaattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgttcaa |
7790654 |
T |
 |
| Q |
352 |
ctcactttta |
361 |
Q |
| |
|
|||||||||| |
|
|
| T |
7790653 |
ctcactttta |
7790644 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 1514352 - 1514428
Alignment:
| Q |
287 |
cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||||| |||| |||||||| ||| | || ||| |||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
1514352 |
cttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactcatttttaca |
1514428 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 6021813 - 6021889
Alignment:
| Q |
287 |
cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
|||||||||| ||| ||||||||||||| | || || ||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
6021813 |
cttgaagctaggatatgtagcttttgattctataatagatttttacactcaagtttatggttcaactcacttttaca |
6021889 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 27500334 - 27500370
Alignment:
| Q |
327 |
ttttacacttaaatttattgttcaactcacttttaca |
363 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
27500334 |
ttttacactcaaatttattgttcaactcatttttaca |
27500370 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 41517363 - 41517327
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacat |
233 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
41517363 |
aaaattgattctaaagatgtagaattgattttgacat |
41517327 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 14173 - 14118
Alignment:
| Q |
304 |
tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttt |
359 |
Q |
| |
|
|||||| |||||| |||| ||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
14173 |
tagcttatgattctagaattgatttttacactcaaatttatttttcaactcacttt |
14118 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 31749 - 31794
Alignment:
| Q |
197 |
aaaattgattctagagatatagaattgattttgacatgtttcgttg |
242 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |||||||||| |||| |
|
|
| T |
31749 |
aaaattgattctagaggtgtagaattgattctgacatgtttggttg |
31794 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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