View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9554_5 (Length: 370)

Name: NF9554_5
Description: NF9554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9554_5
NF9554_5
[»] chr8 (17 HSPs)
chr8 (5-197)||(32767141-32767333)
chr8 (197-370)||(32767306-32767479)
chr8 (253-363)||(32927867-32927977)
chr8 (288-363)||(13384654-13384729)
chr8 (288-363)||(26100146-26100221)
chr8 (197-237)||(8027709-8027749)
chr8 (197-237)||(11038105-11038145)
chr8 (327-363)||(14382445-14382481)
chr8 (197-237)||(39648267-39648307)
chr8 (252-359)||(4950458-4950564)
chr8 (253-363)||(16972064-16972174)
chr8 (327-361)||(35064461-35064495)
chr8 (278-363)||(38868498-38868583)
chr8 (197-237)||(4950408-4950448)
chr8 (327-363)||(9695440-9695476)
chr8 (197-237)||(41614767-41614807)
chr8 (253-361)||(44141052-44141160)
[»] chr2 (18 HSPs)
chr2 (278-363)||(42740977-42741062)
chr2 (197-243)||(42774951-42774997)
chr2 (287-363)||(44439263-44439339)
chr2 (198-237)||(37420319-37420358)
chr2 (304-363)||(42982570-42982629)
chr2 (327-361)||(32307133-32307167)
chr2 (327-361)||(32798510-32798544)
chr2 (256-365)||(30503187-30503296)
chr2 (278-363)||(33019156-33019241)
chr2 (327-363)||(1976864-1976900)
chr2 (327-363)||(7632818-7632854)
chr2 (327-359)||(13475924-13475956)
chr2 (198-242)||(15928551-15928595)
chr2 (197-241)||(16013829-16013873)
chr2 (318-362)||(37420196-37420240)
chr2 (197-237)||(37649596-37649636)
chr2 (197-237)||(40582672-40582712)
chr2 (197-237)||(43717265-43717305)
[»] chr6 (11 HSPs)
chr6 (197-363)||(34620809-34620971)
chr6 (197-363)||(34748246-34748408)
chr6 (305-363)||(1485146-1485204)
chr6 (255-365)||(434235-434345)
chr6 (305-363)||(31305847-31305905)
chr6 (305-363)||(34027417-34027475)
chr6 (278-334)||(30927043-30927099)
chr6 (197-237)||(33997121-33997161)
chr6 (278-363)||(4910908-4910993)
chr6 (298-358)||(25195870-25195930)
chr6 (335-363)||(32888957-32888985)
[»] chr4 (10 HSPs)
chr4 (305-363)||(4243414-4243472)
chr4 (327-363)||(32100341-32100377)
chr4 (198-237)||(19067342-19067381)
chr4 (197-236)||(55085125-55085164)
chr4 (305-363)||(10185221-10185279)
chr4 (253-363)||(32818370-32818480)
chr4 (197-242)||(49138952-49138997)
chr4 (197-234)||(50358139-50358176)
chr4 (197-233)||(35995151-35995187)
chr4 (253-361)||(50061630-50061738)
[»] chr3 (13 HSPs)
chr3 (305-363)||(46853534-46853592)
chr3 (252-363)||(36302157-36302268)
chr3 (305-363)||(35264411-35264469)
chr3 (304-361)||(37335036-37335093)
chr3 (197-237)||(3845234-3845274)
chr3 (287-363)||(52364060-52364136)
chr3 (197-243)||(52925727-52925773)
chr3 (197-242)||(21007758-21007803)
chr3 (305-361)||(35058388-35058445)
chr3 (327-363)||(27266794-27266830)
chr3 (296-363)||(33792005-33792073)
chr3 (327-363)||(37703148-37703184)
chr3 (287-363)||(51285579-51285655)
[»] chr7 (11 HSPs)
chr7 (199-363)||(597946-598105)
chr7 (254-348)||(30182311-30182404)
chr7 (258-363)||(40491558-40491663)
chr7 (197-237)||(38123770-38123810)
chr7 (197-237)||(45004908-45004948)
chr7 (35-102)||(24546960-24547027)
chr7 (304-363)||(38123666-38123725)
chr7 (60-102)||(18030661-18030703)
chr7 (201-243)||(41788245-41788287)
chr7 (48-89)||(26737722-26737763)
chr7 (325-362)||(32938687-32938724)
[»] chr5 (11 HSPs)
chr5 (197-243)||(3043120-3043166)
chr5 (197-237)||(13224740-13224780)
chr5 (197-235)||(15368166-15368204)
chr5 (322-364)||(37886037-37886079)
chr5 (197-242)||(11911926-11911971)
chr5 (35-84)||(39513587-39513636)
chr5 (327-359)||(7925435-7925467)
chr5 (278-361)||(9818734-9818818)
chr5 (327-363)||(10898770-10898806)
chr5 (197-237)||(14670941-14670981)
chr5 (198-242)||(39097188-39097232)
[»] chr1 (14 HSPs)
chr1 (306-363)||(213537-213594)
chr1 (287-363)||(7524122-7524198)
chr1 (197-237)||(8381907-8381947)
chr1 (219-358)||(32088580-32088713)
chr1 (304-363)||(3016188-3016247)
chr1 (304-363)||(10324938-10324997)
chr1 (287-362)||(11049259-11049334)
chr1 (287-362)||(28287337-28287412)
chr1 (200-243)||(37131860-37131903)
chr1 (252-361)||(7790644-7790753)
chr1 (287-363)||(1514352-1514428)
chr1 (287-363)||(6021813-6021889)
chr1 (327-363)||(27500334-27500370)
chr1 (197-233)||(41517327-41517363)
[»] scaffold0361 (1 HSPs)
scaffold0361 (304-359)||(14118-14173)
[»] scaffold0168 (1 HSPs)
scaffold0168 (197-242)||(31749-31794)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 32767141 - 32767333
Alignment:
5 cagcaacacagatgaaaagtaaaaaatatggaaaaacgcaaacagagaacaaatgatatttgatcacggaattcggccaattgtgcttacatctctgagt 104  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32767141 cagcaacacagatgaaaagtaaaaaatacggaaaaacgcaaacagagaacaaatgatatttgatcacggaattcggccaattgtgcttacatctctgagt 32767240  T
105 gtagagtgacatgtttggtttcaatgaaagcctagtgtatgtttggtgtcacgtttgggagagccaaaatagattctagagatatagaattga 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
32767241 gtagagtgacatgtttggtttcaatgaaagcctagtgtatgtttggtgtcacgtttgggagagccaaaattgattctagagatatagaattga 32767333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 197 - 370
Target Start/End: Original strand, 32767306 - 32767479
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgtttcgttgcctggccttaagtagaattgatattcccttcaaagttgattatgcttgaagcta 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32767306 aaaattgattctagagatatagaattgattttgacatgtttcgttgcctggccttaagtagaattgatattcccttcaaagttgattatgcttgaagcta 32767405  T
297 agattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttacacgtgaat 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
32767406 agattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttacacatgaat 32767479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 363
Target Start/End: Original strand, 32927867 - 32927977
Alignment:
253 agtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaac 352  Q
    |||||||||||| || |||  | |||||||| | |||||||||| ||||  ||||||||||||  |||| | | ||||||||  |||||||| |||||||    
32927867 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaac 32927966  T
353 tcacttttaca 363  Q
    |||||||||||    
32927967 tcacttttaca 32927977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 363
Target Start/End: Complemental strand, 13384729 - 13384654
Alignment:
288 ttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||||||| |||  ||||||||||||| |||| ||| ||| ||||  |||||||| ||||||||||||||||||    
13384729 ttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcacttttaca 13384654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 363
Target Start/End: Complemental strand, 26100221 - 26100146
Alignment:
288 ttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||| ||||  ||||||||||||| | || ||| ||||||||  |||||||| ||||||||||||||||||    
26100221 ttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttaca 26100146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 8027709 - 8027749
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
8027709 aaaattgattatagagatatagaattgattttgaaatgttt 8027749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 11038105 - 11038145
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||||||| |||| |||||||||||||||||||    
11038105 aaaattgattctagaggtatataattgattttgacatgttt 11038145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 14382445 - 14382481
Alignment:
327 ttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||||||| ||||||||||||||||||||||||||    
14382445 ttttacactttaatttattgttcaactcacttttaca 14382481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 39648307 - 39648267
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||||||||| || |||||||||||||||||||    
39648307 aaaattgattctagagatgtataattgattttgacatgttt 39648267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 359
Target Start/End: Original strand, 4950458 - 4950564
Alignment:
252 aagtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaa 351  Q
    ||||||||||||| || |||  ||| |||||||  ||||||||||  | || |||||| ||||||  ||| | | ||||||||||||||||||| |||||    
4950458 aagtagaattgattttgcctcaaaaattgattagacttgaagctagcaatc-tagcttatgattcttgaattaatttttacacttaaatttatttttcaa 4950556  T
352 ctcacttt 359  Q
    ||||||||    
4950557 ctcacttt 4950564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 16972174 - 16972064
Alignment:
253 agtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaac 352  Q
    |||||||||||| || |||||| |||||||| |  |||||||||  |||  ||| |||| |||  |||| ||| ||||| ||  |||||||||||||||     
16972174 agtagaattgattttgccttcagagttgattgtatttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaa 16972075  T
353 tcacttttaca 363  Q
    |||||||||||    
16972074 tcacttttaca 16972064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 35064495 - 35064461
Alignment:
327 ttttacacttaaatttattgttcaactcactttta 361  Q
    ||||||||||||||||||| |||||||||||||||    
35064495 ttttacacttaaatttattattcaactcactttta 35064461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 38868498 - 38868583
Alignment:
278 ttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||| | |||||||||||||||  ||||||||| ||| | || ||| ||| ||||  |||||||| |||||||||| |||||||    
38868498 ttgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaatttatagttcaactcaattttaca 38868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 4950408 - 4950448
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||||||  |||| |||||||||||||||||||    
4950408 aaaattgattctagatttatacaattgattttgacatgttt 4950448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 9695476 - 9695440
Alignment:
327 ttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||| ||||||||| |||||||||||||||||    
9695476 ttttacactcaaatttattcttcaactcacttttaca 9695440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 41614767 - 41614807
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||||||| |||| ||||||||||||| |||||    
41614767 aaaattgattctagaggtataaaattgattttgacttgttt 41614807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 361
Target Start/End: Complemental strand, 44141160 - 44141052
Alignment:
253 agtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaac 352  Q
    |||||||||||| || ||| |||| |||||| | ||||||| || ||||  ||| ||||||||| |||  ||| ||| |||| ||| ||||| |||||||    
44141160 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataattttatagttcaac 44141061  T
353 tcactttta 361  Q
    || ||||||    
44141060 tcgctttta 44141052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 42740977 - 42741062
Alignment:
278 ttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||| | |||||||||||||||  ||||||||||||| |||| ||| ||||||||| ||||||| ||| |||||||||||||||    
42740977 ttgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaatttactgtccaactcacttttaca 42741062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 42774997 - 42774951
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgtttcgttgc 243  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||    
42774997 aaaattgattctagaggtatagaattgattttgacatgttccgttgc 42774951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 44439263 - 44439339
Alignment:
287 cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||||| |||   |||||||||||| | || ||| ||| ||||| |||||||||||||||||||||||||||    
44439263 cttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactcacttttaca 44439339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 37420358 - 37420319
Alignment:
198 aaattgattctagagatatagaattgattttgacatgttt 237  Q
    ||||||||||||||| | ||||||||||||||||||||||    
37420358 aaattgattctagaggtgtagaattgattttgacatgttt 37420319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 42982570 - 42982629
Alignment:
304 tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||||||| |||| ||| ||||||||  ||||||||| | |||||||||||||||    
42982570 tagcttttgattccagaattgatttttacacacaaatttattttacaactcacttttaca 42982629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 32307133 - 32307167
Alignment:
327 ttttacacttaaatttattgttcaactcactttta 361  Q
    ||||||||||| |||||||||||||||||||||||    
32307133 ttttacacttatatttattgttcaactcactttta 32307167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 32798544 - 32798510
Alignment:
327 ttttacacttaaatttattgttcaactcactttta 361  Q
    ||||||||||| |||||||||||||||||||||||    
32798544 ttttacacttatatttattgttcaactcactttta 32798510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 30503187 - 30503296
Alignment:
256 agaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactca 355  Q
    |||| |||| || ||| |||| |||||| | |||||||| | ||||| ||||||||||||| |||| ||| |||||||| | ||||||   || ||||||    
30503187 agaaatgattttgcctccaaaattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttttacacatgaatttaaacttgaactca 30503286  T
356 cttttacacg 365  Q
     |||||||||    
30503287 tttttacacg 30503296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 33019241 - 33019156
Alignment:
278 ttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||  |||||||||  |||  ||||||||| ||  |||| ||| ||| |||| ||||||||| ||||||||||||||||||    
33019241 ttgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaactcacttttaca 33019156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 1976900 - 1976864
Alignment:
327 ttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||| |||||||||||| ||||||||||||||    
1976900 ttttacactcaaatttattgttgaactcacttttaca 1976864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 7632818 - 7632854
Alignment:
327 ttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||| || ||||||||||||||||||||||||    
7632818 ttttacactcaagtttattgttcaactcacttttaca 7632854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 13475924 - 13475956
Alignment:
327 ttttacacttaaatttattgttcaactcacttt 359  Q
    ||||||||||||||||||||||||| |||||||    
13475924 ttttacacttaaatttattgttcaaatcacttt 13475956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 15928595 - 15928551
Alignment:
198 aaattgattctagagatatagaattgattttgacatgtttcgttg 242  Q
    ||||||||||| ||| | |||||||||||||||||||||| ||||    
15928595 aaattgattctggaggtgtagaattgattttgacatgtttggttg 15928551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 16013873 - 16013829
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgtttcgtt 241  Q
    |||||| ||||||||| | ||||||||||||| ||||||||||||    
16013873 aaaatttattctagaggtgtagaattgattttaacatgtttcgtt 16013829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 37420240 - 37420196
Alignment:
318 agaactgacttttacacttaaatttattgttcaactcacttttac 362  Q
    |||| ||| ||||||||| ||||||||| ||||||||||||||||    
37420240 agaattgatttttacactcaaatttattattcaactcacttttac 37420196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 37649636 - 37649596
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||| ||| ||| ||||||||||||||||||||    
37649636 aaaattgattcttgaggtatggaattgattttgacatgttt 37649596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 40582672 - 40582712
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||||||| | ||||||||||||| ||||||||    
40582672 aaaattgattctagaggtgtagaattgattttaacatgttt 40582712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 43717265 - 43717305
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||||||  | ||||||||||||||||||||||    
43717265 aaaattgattctagatgtgtagaattgattttgacatgttt 43717305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 363
Target Start/End: Original strand, 34620809 - 34620971
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgtttcgttgcctggccttaagtagaattgatattcccttcaaagttgattatgcttgaagcta 296  Q
    ||||||||||||| || | |||||||||||||||||||||| ||| |||    | || ||||||| || || ||| |  | |||||| | | ||||||||    
34620809 aaaattgattctaaaggtgtagaattgattttgacatgtttggtt-ccta---taaactagaattaattttgcctccggaattgattctacatgaagcta 34620904  T
297 agattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
      | ||||||||| |||||| |||| ||| ||||||||| ||||||||| |||||||||||||||||    
34620905 gaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactcacttttaca 34620971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 363
Target Start/End: Original strand, 34748246 - 34748408
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgtttcgttgcctggccttaagtagaattgatattcccttcaaagttgattatgcttgaagcta 296  Q
    ||||||||||||| || | |||||||||||||||||||||| ||| |||    | || ||||||| || || ||| |  | |||||| | | ||||||||    
34748246 aaaattgattctaaaggtgtagaattgattttgacatgtttggtt-ccta---taaactagaattaattttgcctccggaattgattctacatgaagcta 34748341  T
297 agattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
      | ||||||||| |||||| |||| ||| ||||||||| ||||||||| |||||||||||||||||    
34748342 gaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactcacttttaca 34748408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 1485204 - 1485146
Alignment:
305 agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||||||||| |||| ||| ||| ||||| |||||||||||||||||||||||||||    
1485204 agcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttaca 1485146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 434345 - 434235
Alignment:
255 tagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactc 354  Q
    |||||||||| || | |||| | ||||||||  |||||| ||| ||| |||||||||||||  |||| ||| ||||| || ||||||||   ||||||||    
434345 tagaattgatttttctttcataattgattatatttgaagttaaaattaatagcttttgattttagaattgatttttatacataaatttaaatttcaactc 434246  T
355 acttttacacg 365  Q
    |||||||||||    
434245 acttttacacg 434235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 31305905 - 31305847
Alignment:
305 agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||||||||| |||| ||| || |||||| |||||||||| ||||||||||||||||    
31305905 agcttttgattctagaattgatttatacactcaaatttattgatcaactcacttttaca 31305847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 34027475 - 34027417
Alignment:
305 agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||||||||| |||| ||| ||||||||| ||||||||| ||||||||||| |||||    
34027475 agcttttgattctagaattgatttttacactcaaatttattattcaactcactcttaca 34027417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 30927043 - 30927099
Alignment:
278 ttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacac 334  Q
    |||||||| |||||||||||||||| ||||||||||||  |||| ||| ||||||||    
30927043 ttgattatacttgaagctaagattcgtagcttttgattatagaattgatttttacac 30927099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 33997121 - 33997161
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||||||||| |||||| |||||||||||||||    
33997121 aaaattgattctagagatttagaatcgattttgacatgttt 33997161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 4910908 - 4910993
Alignment:
278 ttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||| | |||||||||| ||||  ||||||||||||| |||| ||| ||| |||   |||||||| |||| |||||||||||||    
4910908 ttgattctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttaca 4910993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 25195870 - 25195930
Alignment:
298 gattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcactt 358  Q
    |||| |||||||||||||| |||| ||| || |||||  |||||||| |||||||||||||    
25195870 gatttatagcttttgattctagaattgaattgtacacacaaatttatagttcaactcactt 25195930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 363
Target Start/End: Complemental strand, 32888985 - 32888957
Alignment:
335 ttaaatttattgttcaactcacttttaca 363  Q
    |||||||||||||||||||||||||||||    
32888985 ttaaatttattgttcaactcacttttaca 32888957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 4243414 - 4243472
Alignment:
305 agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||||||||| |||| ||| ||||||||| ||||||||||||| |||||||||||||    
4243414 agcttttgattctagaattgatttttacactcaaatttattgttctactcacttttaca 4243472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 32100341 - 32100377
Alignment:
327 ttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||| |||||||||||||||||||||||||||    
32100341 ttttacactcaaatttattgttcaactcacttttaca 32100377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 19067342 - 19067381
Alignment:
198 aaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||| ||||||||| |||||||||||||||||||    
19067342 aaattgattccagagatataaaattgattttgacatgttt 19067381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 55085164 - 55085125
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgtt 236  Q
    |||||||||||||||| ||||||||||||||| |||||||    
55085164 aaaattgattctagaggtatagaattgattttaacatgtt 55085125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 10185221 - 10185279
Alignment:
305 agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||||||||| | || |||  |||||||| |||||||||||| ||||||||||||||    
10185221 agcttttgattctaaaattgatctttacactcaaatttattgtttaactcacttttaca 10185279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 363
Target Start/End: Complemental strand, 32818480 - 32818370
Alignment:
253 agtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaac 352  Q
    |||||||||||| || ||| || | |||||| |  |||||||||  |||  ||||||||||||| |||| ||| |||| |||  |||||||| |||||||    
32818480 agtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaac 32818381  T
353 tcacttttaca 363  Q
    | |||||||||    
32818380 taacttttaca 32818370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 49138997 - 49138952
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgtttcgttg 242  Q
    |||||||||||||||| | ||||||||||| |||||||||| ||||    
49138997 aaaattgattctagaggtgtagaattgattctgacatgtttggttg 49138952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 50358176 - 50358139
Alignment:
197 aaaattgattctagagatatagaattgattttgacatg 234  Q
    |||||||||||||||| | |||||||||||||||||||    
50358176 aaaattgattctagaggtgtagaattgattttgacatg 50358139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 35995151 - 35995187
Alignment:
197 aaaattgattctagagatatagaattgattttgacat 233  Q
    |||||||||||||||| | ||||||||||||||||||    
35995151 aaaattgattctagagttgtagaattgattttgacat 35995187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 361
Target Start/End: Complemental strand, 50061738 - 50061630
Alignment:
253 agtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaac 352  Q
    |||||||||||| || ||| |||| |||||| | ||||||| || ||||  ||| ||||||||| |||  ||| ||| |||| ||| ||||| |||||||    
50061738 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataattttatggttcaac 50061639  T
353 tcactttta 361  Q
    || ||||||    
50061638 tcgctttta 50061630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 46853592 - 46853534
Alignment:
305 agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||||||||| |||| ||| ||| ||||| |||||||||||||||||||||||||||    
46853592 agcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttaca 46853534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 363
Target Start/End: Original strand, 36302157 - 36302268
Alignment:
252 aagtagaattgatattcccttcaaagttgattatgcttgaagcta-agattcatagcttttgattcgagaactgacttttacacttaaatttattgttca 350  Q
    ||||||||||||| || |||||| |||||||| |  ||||||||| |||||   || ||||||||  |||| ||| |||  |||||||||||||||||||    
36302157 aagtagaattgattttgccttcagagttgattctatttgaagctagagattgg-agattttgattttagaattgattttagcacttaaatttattgttca 36302255  T
351 actcacttttaca 363  Q
    |||||||||||||    
36302256 actcacttttaca 36302268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 35264469 - 35264411
Alignment:
305 agcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||||||||| |||| ||| ||| ||||||||||||||||||||| ||| |||||||    
35264469 agcttttgattctagaattgattttaacacttaaatttattgttcaagtcatttttaca 35264411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 37335093 - 37335036
Alignment:
304 tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcactttta 361  Q
    ||||||||||||| |||| ||| |||||||||| |||| ||||||||||||| |||||    
37335093 tagcttttgattctagaattgatttttacacttgaattcattgttcaactcattttta 37335036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 3845274 - 3845234
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||||||| | ||||||||||||||||||||||    
3845274 aaaattgattctagaggtgtagaattgattttgacatgttt 3845234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 52364060 - 52364136
Alignment:
287 cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||||||| |||| |||||||||||||| | || ||| ||| | || ||||||||  ||||||||||||||||||    
52364060 cttgaagctatgatttatagcttttgattctataattgattttcaaacataaatttacagttcaactcacttttaca 52364136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 52925773 - 52925727
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgtttcgttgc 243  Q
    |||||||||||||||| | || ||||||||||||||||||| |||||    
52925773 aaaattgattctagaggtgtataattgattttgacatgtttggttgc 52925727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 21007803 - 21007758
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgtttcgttg 242  Q
    |||||||||| || ||||||| ||||||||||||||||||| ||||    
21007803 aaaattgattttaaagatatataattgattttgacatgtttagttg 21007758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 35058388 - 35058445
Alignment:
305 agcttttgattcgagaactgacttttacacttaaat-ttattgttcaactcactttta 361  Q
    |||||||||||| |||| ||| ||| ||||| |||| |||||||||||||||||||||    
35058388 agcttttgattctagaattgattttaacactcaaatattattgttcaactcactttta 35058445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 27266830 - 27266794
Alignment:
327 ttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||| ||||||||||||||||| |||||||||    
27266830 ttttacactcaaatttattgttcaactaacttttaca 27266794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 33792073 - 33792005
Alignment:
296 aagattcatagcttttgattcgagaactgacttttacacttaaatttattg-ttcaactcacttttaca 363  Q
    ||||||||||| ||||||||  | || ||| |||||||| ||||||||||| || ||||||||||||||    
33792073 aagattcatagtttttgattttataattgatttttacacataaatttattgtttaaactcacttttaca 33792005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 37703148 - 37703184
Alignment:
327 ttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||| ||||||||||||||| |||||||||||    
37703148 ttttacactcaaatttattgttcaattcacttttaca 37703184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 51285579 - 51285655
Alignment:
287 cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||||| | ||| |||||||||||| |||| ||| |||| |||| |||||| ||||| ||| | ||||||||    
51285579 cttgaagctaaaaatcacagcttttgattctagaattgatttttgcactcaaatttgttgtttaacccgcttttaca 51285655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 363
Target Start/End: Complemental strand, 598105 - 597946
Alignment:
199 aattgattctagagatatagaattgattttgacatgtttcgttgcctggccttaagtagaattgatattcccttcaaagttgattatgcttgaagctaag 298  Q
    |||||||||||||| | | |||||||||||||||| ||| ||| |||   || |||| ||||| |||||  || || | |||||| | |||||||||||     
598105 aattgattctagaggtgtggaattgattttgacatttttagtt-cct---ctaaagtggaatttatattggctgcagaattgattctacttgaagctaaa 598010  T
299 attcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||  ||||||| ||||| | || ||| | || |||| |||||||||||||||||||||||||||    
598009 attg-tagctttcgattctataattgattcttgcactaaaatttattgttcaactcacttttaca 597946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 30182404 - 30182311
Alignment:
254 gtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgtt 348  Q
    ||||||||||| |||||| |||| |||||| | ||||||||||| | |  ||||||||||||| |||| | | ||||||||| ||||||||||||    
30182404 gtagaattgat-ttccctccaaaattgattctacttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaatttattgtt 30182311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 40491558 - 40491663
Alignment:
258 aattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcact 357  Q
    ||||||| || |||||| | |||| | | ||||||| |||| ||  ||||||||||||| |||| ||||||||||||  |||||||  ||| ||||||||    
40491558 aattgattttgccttcagaattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcact 40491657  T
358 tttaca 363  Q
    ||||||    
40491658 tttaca 40491663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 38123810 - 38123770
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
38123810 aaaattgattctagagatgtagaattgattttaacatgttt 38123770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 45004908 - 45004948
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||||||| | ||||||||||||||||||||||    
45004908 aaaattgattctagaggtgtagaattgattttgacatgttt 45004948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 24546960 - 24547027
Alignment:
35 gaaaaacgcaaacagagaacaaatgatatttgatcacggaattcggccaattgtgcttacatctctga 102  Q
    |||||||||||| |||||| | ||||||||||||| |||| ||||||||| ||||  || ||||||||    
24546960 gaaaaacgcaaatagagaaaacatgatatttgatctcggagttcggccaagtgtgtctatatctctga 24547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 38123725 - 38123666
Alignment:
304 tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||| | |||| |||| ||| ||||||||| |||||||||| ||||||||||||||||    
38123725 tagcttctaattctagaattgatttttacactcaaatttattggtcaactcacttttaca 38123666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 18030703 - 18030661
Alignment:
60 atatttgatcacggaattcggccaattgtgcttacatctctga 102  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||    
18030703 atatttgatcatggagttcggccaattgtgcttacgtctctga 18030661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 41788245 - 41788287
Alignment:
201 ttgattctagagatatagaattgattttgacatgtttcgttgc 243  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||    
41788245 ttgattctagaaatatagaattgattttggcatgtttggttgc 41788287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 26737763 - 26737722
Alignment:
48 agagaacaaatgatatttgatcacggaattcggccaattgtg 89  Q
    |||||||| | |||||||||||||||| ||||||||||||||    
26737763 agagaacacacgatatttgatcacggagttcggccaattgtg 26737722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 32938724 - 32938687
Alignment:
325 acttttacacttaaatttattgttcaactcacttttac 362  Q
    ||||||| ||||||||||||||||||||||| ||||||    
32938724 acttttagacttaaatttattgttcaactcagttttac 32938687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 3043166 - 3043120
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgtttcgttgc 243  Q
    |||||||||||||||| | |||||||||||||||||||||| |||||    
3043166 aaaattgattctagaggtgtagaattgattttgacatgtttagttgc 3043120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 13224780 - 13224740
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||||||||| || |||||||||||||||||||    
13224780 aaaattgattctagagatgtataattgattttgacatgttt 13224740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 15368166 - 15368204
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgt 235  Q
    ||||||||||||||| || ||||||||||||||||||||    
15368166 aaaattgattctagatatgtagaattgattttgacatgt 15368204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 37886079 - 37886037
Alignment:
322 ctgacttttacacttaaatttattgttcaactcacttttacac 364  Q
    |||| ||||||| | ||||||||||||||||||||||||||||    
37886079 ctgatttttacattgaaatttattgttcaactcacttttacac 37886037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 11911971 - 11911926
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgtttcgttg 242  Q
    |||||||||||||||||| || ||||||||||||| ||||| ||||    
11911971 aaaattgattctagagatgtaaaattgattttgacttgtttagttg 11911926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 39513636 - 39513587
Alignment:
35 gaaaaacgcaaacagagaacaaatgatatttgatcacggaattcggccaa 84  Q
    |||||||||||||||||||||||  | |||||||||| |||||| |||||    
39513636 gaaaaacgcaaacagagaacaaacaagatttgatcacagaattcagccaa 39513587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 7925435 - 7925467
Alignment:
327 ttttacacttaaatttattgttcaactcacttt 359  Q
    ||||||||| |||||||||||||||||||||||    
7925435 ttttacactcaaatttattgttcaactcacttt 7925467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 361
Target Start/End: Original strand, 9818734 - 9818818
Alignment:
278 ttgattatgcttgaagctaagattcatagcttttgattcgagaactga-cttttacacttaaatttattgttcaactcactttta 361  Q
    |||||| | |||||||||| ||||  ||||||||||||| |||| |||  ||||| ||  |||||||| ||||||||||||||||    
9818734 ttgattctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcactttta 9818818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 10898770 - 10898806
Alignment:
327 ttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||  |||||||||||||||||||||||||||    
10898770 ttttacacacaaatttattgttcaactcacttttaca 10898806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 14670941 - 14670981
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    ||||||||||| |||| ||||||||||||||| ||||||||    
14670941 aaaattgattcaagaggtatagaattgattttaacatgttt 14670981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 39097188 - 39097232
Alignment:
198 aaattgattctagagatatagaattgattttgacatgtttcgttg 242  Q
    ||||||||| ||||| | |||||||||||||||||||||| ||||    
39097188 aaattgattatagaggtgtagaattgattttgacatgtttggttg 39097232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 213594 - 213537
Alignment:
306 gcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||||| |||| ||| ||||| ||| |||||| ||||||||||||||||||||    
213594 gcttttgattctagaattgatttttaaactcaaatttgttgttcaactcacttttaca 213537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 7524122 - 7524198
Alignment:
287 cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||| || ||||  ||||||||||||  |||| ||| ||||||||  |||||||| ||||||||||||||||||    
7524122 cttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcacttttaca 7524198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 8381907 - 8381947
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgttt 237  Q
    |||||||||||||||| |||| |||||||||||||||||||    
8381907 aaaattgattctagaggtataaaattgattttgacatgttt 8381947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 358
Target Start/End: Complemental strand, 32088713 - 32088580
Alignment:
219 aattgattttgacatgtttcgttgcctggccttaagtagaattgatattcccttcaaagttgattatg-cttgaagctaagattcatagcttttgattcg 317  Q
    ||||||||||||||||||| |||||     || ||||||||||||| |||| | |||| |||||| |  |||||||||| ||||   |||||||||||      
32088713 aattgattttgacatgtttggttgct----ctcaagtagaattgattttcc-tacaaaattgattctaacttgaagctaggatttcgagcttttgatt-- 32088621  T
318 agaactgacttttacacttaaatttattgttcaactcactt 358  Q
    | || ||| ||||||||| ||||||||||||||||||||||    
32088620 aaaagtgatttttacactgaaatttattgttcaactcactt 32088580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 3016188 - 3016247
Alignment:
304 tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||||||| |||| |||  ||||||| ||||||||  ||||||||||||||||||    
3016188 tagcttttgattctagaattgatgtttacacataaatttacggttcaactcacttttaca 3016247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 10324997 - 10324938
Alignment:
304 tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||||||| | || ||| ||||||||| ||||||||||||  |||||||||||||    
10324997 tagcttttgattctataattgatttttacactcaaatttattgttatactcacttttaca 10324938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 362
Target Start/End: Original strand, 11049259 - 11049334
Alignment:
287 cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttac 362  Q
    |||||||||| ||||  ||||||||||||| | || ||| ||||||||  |||||||| |||||| ||||||||||    
11049259 cttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcacttttac 11049334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 362
Target Start/End: Complemental strand, 28287412 - 28287337
Alignment:
287 cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttac 362  Q
    |||||||| | ||||  ||||||||||||  |||| ||| ||| ||||| ||||||||||||||||| ||||||||    
28287412 cttgaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgttcaactaacttttac 28287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 37131860 - 37131903
Alignment:
200 attgattctagagatatagaattgattttgacatgtttcgttgc 243  Q
    ||||||||||||| |||||||||||||||| ||||||| |||||    
37131860 attgattctagaggtatagaattgattttggcatgtttggttgc 37131903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 361
Target Start/End: Complemental strand, 7790753 - 7790644
Alignment:
252 aagtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaa 351  Q
    ||||| ||||||||||  ||| | | |||||| | ||||||| || ||||  ||| ||| ||||| | || ||| ||||||||  |||||||||||||||    
7790753 aagtataattgatattgtctttagaattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgttcaa 7790654  T
352 ctcactttta 361  Q
    ||||||||||    
7790653 ctcactttta 7790644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 1514352 - 1514428
Alignment:
287 cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||||||| ||||  |||||||| |||  | || ||| ||||||||  ||||||||||||||||||| |||||||    
1514352 cttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactcatttttaca 1514428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 6021813 - 6021889
Alignment:
287 cttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttaca 363  Q
    |||||||||| |||   ||||||||||||| | ||  || ||||||||| || ||||| ||||||||||||||||||    
6021813 cttgaagctaggatatgtagcttttgattctataatagatttttacactcaagtttatggttcaactcacttttaca 6021889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 27500334 - 27500370
Alignment:
327 ttttacacttaaatttattgttcaactcacttttaca 363  Q
    ||||||||| ||||||||||||||||||| |||||||    
27500334 ttttacactcaaatttattgttcaactcatttttaca 27500370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 41517363 - 41517327
Alignment:
197 aaaattgattctagagatatagaattgattttgacat 233  Q
    ||||||||||||| |||| ||||||||||||||||||    
41517363 aaaattgattctaaagatgtagaattgattttgacat 41517327  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 14173 - 14118
Alignment:
304 tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttt 359  Q
    |||||| |||||| |||| ||| ||||||||| ||||||||| |||||||||||||    
14173 tagcttatgattctagaattgatttttacactcaaatttatttttcaactcacttt 14118  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 31749 - 31794
Alignment:
197 aaaattgattctagagatatagaattgattttgacatgtttcgttg 242  Q
    |||||||||||||||| | ||||||||||| |||||||||| ||||    
31749 aaaattgattctagaggtgtagaattgattctgacatgtttggttg 31794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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