View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9554_low_2 (Length: 429)
Name: NF9554_low_2
Description: NF9554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9554_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 40893870 - 40894279
Alignment:
| Q |
1 |
tgtttctggtatcaaatctgaatctctttgatagagttatggttttgtgggttttggttttgagctgactgaatgaactactgtcaccccattcactcac |
100 |
Q |
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| T |
40893870 |
tgtttttggtatcaaatctgaatctctttgatagacttatggttttgtgggttttggttttgagctgactgaaggaactactgtcaccccattcactcac |
40893969 |
T |
|
| Q |
101 |
ccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgtttcagggagcttggactattttaggagttgtttgtctgtttcnnnnnn |
200 |
Q |
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| T |
40893970 |
ccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgtttcagggagcttgaactatttcaggagttgtttgtctgtttctttttt |
40894069 |
T |
|
| Q |
201 |
nnctctctcgccatttcagcttcaaatttgcgtttgatttttcatttagggagtgagtgagatcatttgtagtggatgtatgtgtagcttcttgtggtgt |
300 |
Q |
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| T |
40894070 |
ttttctctcgccatttcagcttcaaatttgcgtttgatttttcatttaggaagtgagtgagatcatttgtagtggatgtatgtgtagcttcttgtggtgt |
40894169 |
T |
|
| Q |
301 |
gtctcagaattatgtggtttctgtacatatggagctacaaaaaccatgaatgttgtaatgtttgtggtgtgttaaagttggaattgttttacaattagga |
400 |
Q |
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| T |
40894170 |
gtctcagaattatgtggtttgtgtacatatggagctacaaaaatcatgaatgttgtaatgtttgtggtgtgttaaagttggaattgttttacaattagga |
40894269 |
T |
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| Q |
401 |
cccaaaagtt |
410 |
Q |
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| T |
40894270 |
cccaaaagtt |
40894279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 31621235 - 31621330
Alignment:
| Q |
59 |
tttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt |
154 |
Q |
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| T |
31621235 |
tttgagctgactgaaggaactaccgtccccccattcactcacccatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgttt |
31621330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 36666918 - 36667014
Alignment:
| Q |
59 |
tttgagctgactgaatgaactactgtcacccc-attcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt |
154 |
Q |
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| T |
36666918 |
tttgaactgactgaaggaactaccgtcccccccattcactcactcatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgttt |
36667014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 31621364 - 31621396
Alignment:
| Q |
212 |
catttcagcttcaaatttgcgtttgatttttca |
244 |
Q |
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| T |
31621364 |
catttcagcttcaaatttgcgtttgctttttca |
31621396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 36574895 - 36574828
Alignment:
| Q |
59 |
tttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttc |
126 |
Q |
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| T |
36574895 |
tttgagctgactgaaggaactaccgtccccccattcactcacccatcttcatttctaaattgaatttc |
36574828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 26530441 - 26530346
Alignment:
| Q |
59 |
tttgagctgactgaatgaactactgtcaccccattcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt |
154 |
Q |
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| T |
26530441 |
tttgagccgactgaaggaactatcgtccccccattcactcacccatcttcatttctaaattgaatttcggattggaggtttgcttgttgtctgttt |
26530346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 36574766 - 36574734
Alignment:
| Q |
212 |
catttcagcttcaaatttgcgtttgatttttca |
244 |
Q |
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| T |
36574766 |
catttcagcttcaaatttgcgtttgctttttca |
36574734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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