View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9554_low_3 (Length: 401)
Name: NF9554_low_3
Description: NF9554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9554_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 4645672 - 4646038
Alignment:
| Q |
19 |
atgacgcaatttattataattaacnnnnnnngagaaaatacaagatagctagcttggaatgaatttcatcatatcataggaattatattgcatatagaat |
118 |
Q |
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| T |
4645672 |
atgacgcaatttattataattaactttatttgagaaaatacaagatagctagcttggaatgaatttcatcatatcataggaattatattgcatatagaat |
4645771 |
T |
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| Q |
119 |
aaaagatcattaattaagcatagaaagtggttaattaggcaatgtagtagaggggatcagggagcttgaaagtcctttcaccagtgttggttccaagaat |
218 |
Q |
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| T |
4645772 |
aaaagatcattaattaagcacagaaagtggttaattaggcaatgtagtagaggggatcagggagcttgaaagtcctttcaccagtattggttccaagaat |
4645871 |
T |
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| Q |
219 |
atcactccattgatctccaatgtttccaacaattctgtatccttcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatga |
318 |
Q |
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| T |
4645872 |
atcactccattgatctccaatgtttccaacaattctgtatccttcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatga |
4645971 |
T |
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| Q |
319 |
tatatggttgtattcctgcaaccnnnnnnntttagtatattttttaatgtacatacaaattaatact |
385 |
Q |
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| T |
4645972 |
tatatggttgtattcctgcaaccaaaaaaatttagtatattttttaatgtacatacaaattaatact |
4646038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 157 - 322
Target Start/End: Original strand, 4650104 - 4650269
Alignment:
| Q |
157 |
gcaatgtagtagaggggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattgatctccaatgtttccaacaattctgt |
256 |
Q |
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| T |
4650104 |
gcaatgtagtaaagaggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataattctcc |
4650203 |
T |
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| Q |
257 |
atccttcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatgatata |
322 |
Q |
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| T |
4650204 |
atccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttaccatgatata |
4650269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 23682147 - 23681988
Alignment:
| Q |
162 |
gtagtagaggggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattgatctccaatgtttccaacaattctgtatcct |
261 |
Q |
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| T |
23682147 |
gtagtaaagaggatcagggagtttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactatttccaataattctccatcct |
23682048 |
T |
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| Q |
262 |
tcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatgatat |
321 |
Q |
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| T |
23682047 |
tcttcttcaagcttctttctctcagatgatttgtattgaaatgctattttaccatgatat |
23681988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 232 - 336
Target Start/End: Original strand, 41872257 - 41872361
Alignment:
| Q |
232 |
tctccaatgtttccaacaattctgtatccttcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatgatatatggttgtat |
331 |
Q |
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||||| |||||||||| ||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
41872257 |
tctcctatgtttccaatgattttgtatccttcttcctccagcttctttctctctgacgatttgtatgtaactgctgttttaccatgatatattgatgtat |
41872356 |
T |
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| Q |
332 |
tcctg |
336 |
Q |
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|||| |
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| T |
41872357 |
ccctg |
41872361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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