View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9554_low_4 (Length: 320)
Name: NF9554_low_4
Description: NF9554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9554_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 32767329 - 32767021
Alignment:
| Q |
1 |
ttctatatctctagaatcaattttggctctcccaaacgtgacaccaaacatacactaggctttcattgaaaccaaacatgtcactctacactcagagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32767329 |
ttctatatctctagaatcaattttggctctcccaaacgtgacaccaaacatacactaggctttcattgaaaccaaacatgtcactctacactcagagatg |
32767230 |
T |
|
| Q |
101 |
taagcacaattggccgaattccgtgatcaaatatcatttgttctctgtttgcgtttttccatattttttacttttcatctgtgttgctgttctaatatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32767229 |
taagcacaattggccgaattccgtgatcaaatatcatttgttctctgtttgcgtttttccgtattttttacttttcatctgtgttgctgttctaatatag |
32767130 |
T |
|
| Q |
201 |
ctagatgttgcgttactttgttcatgttttttaagggcgtaggatttggaattaaaaggttttatatttttatatgcgtgattgtggaagttgcgagttt |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32767129 |
ctagatgttgctttactttgttcatgttttttaagggggtaggatttggaattaaaaggttttatatttttatatgcgtgattgtggaagttgcgagttt |
32767030 |
T |
|
| Q |
301 |
ttgcctttg |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
32767029 |
ttgcctttg |
32767021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 24547027 - 24546960
Alignment:
| Q |
92 |
tcagagatgtaagcacaattggccgaattccgtgatcaaatatcatttgttctctgtttgcgtttttc |
159 |
Q |
| |
|
|||||||| || |||| ||||||||| |||| ||||||||||||| | |||||| |||||||||||| |
|
|
| T |
24547027 |
tcagagatatagacacacttggccgaactccgagatcaaatatcatgttttctctatttgcgtttttc |
24546960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 18030661 - 18030703
Alignment:
| Q |
92 |
tcagagatgtaagcacaattggccgaattccgtgatcaaatat |
134 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
18030661 |
tcagagacgtaagcacaattggccgaactccatgatcaaatat |
18030703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 26737722 - 26737763
Alignment:
| Q |
105 |
cacaattggccgaattccgtgatcaaatatcatttgttctct |
146 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||||||| |
|
|
| T |
26737722 |
cacaattggccgaactccgtgatcaaatatcgtgtgttctct |
26737763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 39513587 - 39513636
Alignment:
| Q |
110 |
ttggccgaattccgtgatcaaatatcatttgttctctgtttgcgtttttc |
159 |
Q |
| |
|
||||| |||||| |||||||||| | ||||||||||||||||||||||| |
|
|
| T |
39513587 |
ttggctgaattctgtgatcaaatcttgtttgttctctgtttgcgtttttc |
39513636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University