View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9555_high_2 (Length: 406)
Name: NF9555_high_2
Description: NF9555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9555_high_2 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 238 - 406
Target Start/End: Original strand, 4547305 - 4547473
Alignment:
| Q |
238 |
agatagagatttcgtatactaatcttttggcgatctagatttttagttcattaattttgcaaacagcttcggaatcttaatttacttgttgatccaaaca |
337 |
Q |
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| T |
4547305 |
agatagagatgtcgtatactaatcttttggcgatctagatttttatttcattaattttgcaaacagcttctgaatcttaatttacttgttgatccaaaca |
4547404 |
T |
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| Q |
338 |
cttcctaccaatgagttccaaccttaacagggttggggtaagagctaaggagccatgcctagttttaga |
406 |
Q |
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| T |
4547405 |
cttcctaccaatgagttccaaccttaacagggttggggtaatagctaaggagccgtgcctagttttaga |
4547473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 4546992 - 4547129
Alignment:
| Q |
7 |
gagaagcataggaggagattggattagacccttctcttgttactgttgttactcttctcgaaccctttcatactaaggtgtactgttacttactttttat |
106 |
Q |
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| T |
4546992 |
gagaagcaaaggaggagattggattagacccttctcttgttactgttgttactcttctcgaaccctttcatactaaggtctactgctacttactttttat |
4547091 |
T |
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| Q |
107 |
tatctaccactaatctattaaatttgtccagtccaagt |
144 |
Q |
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| T |
4547092 |
tatctaccactaatctattaaatttctccagtccaagt |
4547129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 206
Target Start/End: Original strand, 4547158 - 4547188
Alignment:
| Q |
176 |
gaccaaaccaacaaagggaaaacacattcga |
206 |
Q |
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| T |
4547158 |
gaccaaaccaacaaagggaaaacacattcga |
4547188 |
T |
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