View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9555_low_1 (Length: 491)
Name: NF9555_low_1
Description: NF9555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9555_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 275836 - 275936
Alignment:
| Q |
88 |
tatcatatgacgtgtattggatttatagataactttaattaattaaataaaatacaaaatggaatcaactattaaaatattattgcacttgaaaccatat |
187 |
Q |
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| T |
275836 |
tatcatatgatgtgtattagatttacagataactttaattaattaaataaaatacaaaatggaatcaattattaaaatagtattgcacttgagactatat |
275935 |
T |
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| Q |
188 |
a |
188 |
Q |
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| T |
275936 |
a |
275936 |
T |
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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 275395 - 275443
Alignment:
| Q |
13 |
agcagagaaaaatgtttagaactctattgatgtgcagactattatcata |
61 |
Q |
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| T |
275395 |
agcagagaaaaatgtctagaactctattgatgtgtggactattatcata |
275443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 46662972 - 46662938
Alignment:
| Q |
107 |
gatttatagataactttaattaattaaataaaata |
141 |
Q |
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| T |
46662972 |
gatttatggataactttaattaattaaataaaata |
46662938 |
T |
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