View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9555_low_5 (Length: 379)

Name: NF9555_low_5
Description: NF9555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9555_low_5
NF9555_low_5
[»] chr6 (32 HSPs)
chr6 (19-379)||(4558555-4558915)
chr6 (113-379)||(4572396-4572660)
chr6 (179-379)||(4587062-4587260)
chr6 (247-379)||(4258742-4258874)
chr6 (255-377)||(4471346-4471468)
chr6 (214-379)||(4612253-4612416)
chr6 (251-379)||(3173433-3173561)
chr6 (251-379)||(4507341-4507469)
chr6 (251-379)||(4618731-4618859)
chr6 (255-376)||(4462640-4462761)
chr6 (249-379)||(4482295-4482425)
chr6 (249-379)||(4575885-4576015)
chr6 (255-379)||(4265631-4265755)
chr6 (255-379)||(4488771-4488895)
chr6 (255-379)||(4517770-4517894)
chr6 (251-379)||(4603540-4603668)
chr6 (247-379)||(4623737-4623869)
chr6 (255-379)||(4627580-4627704)
chr6 (245-379)||(4581444-4581578)
chr6 (251-379)||(4513549-4513677)
chr6 (251-379)||(4594440-4594568)
chr6 (251-379)||(4565459-4565587)
chr6 (272-361)||(4569518-4569607)
chr6 (267-379)||(4562091-4562204)
chr6 (212-379)||(4599593-4599758)
chr6 (21-98)||(4572706-4572788)
chr6 (21-73)||(4587258-4587310)
chr6 (255-337)||(4255395-4255477)
chr6 (339-379)||(4502951-4502991)
chr6 (251-299)||(4493415-4493463)
chr6 (249-333)||(4497813-4497897)
chr6 (251-299)||(4472616-4472664)
[»] scaffold0475 (1 HSPs)
scaffold0475 (249-379)||(2254-2384)
[»] scaffold0288 (1 HSPs)
scaffold0288 (251-379)||(2021-2149)
[»] chr3 (5 HSPs)
chr3 (251-379)||(1282863-1282991)
chr3 (333-379)||(35776276-35776322)
chr3 (336-379)||(35842083-35842126)
chr3 (336-379)||(35854591-35854634)
chr3 (336-379)||(35869200-35869243)
[»] chr7 (1 HSPs)
chr7 (245-376)||(3088178-3088309)
[»] scaffold0199 (1 HSPs)
scaffold0199 (251-379)||(1188-1316)
[»] chr8 (2 HSPs)
chr8 (251-379)||(1675951-1676079)
chr8 (249-379)||(20862378-20862508)
[»] chr5 (1 HSPs)
chr5 (258-379)||(24104525-24104646)


Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 4558915 - 4558555
Alignment:
Q  19 caataaactttttaatgaaaaattgttttccttctataacaaaaagtggtgacttgacaagtatgtatcaattattgtgttacatattccttagaatttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  4558915 caataaactttttaatgaaaaattgttttccttctataacaaaaagtggtgacttgataagtatgtatcaattattgtgttacatattacttagaatttg 4558816  T
Q  119 agtttgctttccttgtcttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttagctcaaca 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4558815 agtttgctttccttgacttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttagctcaaca 4558716  T
Q  219 ttcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||    
T  4558715 ttcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaa 4558616  T
Q  319 agcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacg 379  Q
    | ||||||||||||| ||| ||||||||||||| ||| |||||||||||||| ||||||||    
T  4558615 aacttcttcaccttagaggatttcacataacctatgtaaacactgaatacaaccacaaacg 4558555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 113 - 379
Target Start/End: Complemental strand, 4572660 - 4572396
Alignment:
Q  113 aatttgagtttgctttccttgtcttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttagc 212  Q
    ||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||    
T  4572660 aatttgattttgctttccttgtcttttgtctct-atcttcttttccacaaatccaagaaacattggatttatctttattaaaacattggtttcc-ttagc 4572563  T
Q  213 tcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaac 312  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | |||||| |||    
T  4572562 tcaacattcaaacacaaaaactcaataatgagtgataaaaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaac 4572463  T
Q  313 tagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacg 379  Q
    |||||||  |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  4572462 tagcaaaatttcttcaccttagaggttttcacataacctatgtaaacactgaatacaatcacaaacg 4572396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 179 - 379
Target Start/End: Complemental strand, 4587260 - 4587062
Alignment:
Q  179 ctttatctttattaaaccattggcttcccttagctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatat 278  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||||||  |||| |||||||||||  |||||| |||||||||||||| |||| |    
T  4587260 ctttatctctattaaaccattggcttccctttgctcaaaattcaaacacaaa--ctcagaaatgagtgattcaaaacctcatgctgtgttaatcccatct 4587163  T
Q  279 ccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaac 378  Q
    |||| |||||||||||||||| | |||||||||||||| || ||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||    
T  4587162 ccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaaacactgaatacaatcacaaac 4587063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 247 - 379
Target Start/End: Original strand, 4258742 - 4258874
Alignment:
Q  247 ataaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacat 346  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||||| ||||||||||||||||    
T  4258742 ataaaaagccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacat 4258841  T
Q  347 aacctttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||||||||||||||||| |||||||||||    
T  4258842 aacctttgtcaacactgaatataatcacaaacg 4258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 255 - 377
Target Start/End: Complemental strand, 4471468 - 4471346
Alignment:
Q  255 ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg 354  Q
    ||||||||||| || ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  4471468 ccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttg 4471369  T
Q  355 tcaacactgaatacaatcacaaa 377  Q
    |||||||||||||||||||||||    
T  4471368 tcaacactgaatacaatcacaaa 4471346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 214 - 379
Target Start/End: Original strand, 4612253 - 4612416
Alignment:
Q  214 caacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaact 313  Q
    |||||||||||||||||  |||| |||||||||||  |||||||||||| ||||||||||||||||||| |||||||||||||||| | ||  | |||||    
T  4612253 caacattcaaacacaaa--ctcagaaatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaact 4612350  T
Q  314 agcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacg 379  Q
    |||||| ||||||||||||| ||| ||||||||||| || |||||||| |||||||||||||||||    
T  4612351 agcaaaacttcttcaccttagaggctttcacataacattcgtcaacaccgaatacaatcacaaacg 4612416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 3173561 - 3173433
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc 350  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||||| | ||||||||||||||||| || |||||| ||| ||| ||||||||||||    
T  3173561 aaaaccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagaggctttcacataacc 3173462  T
Q  351 tttgtcaacactgaatacaatcacaaacg 379  Q
    ||||| |||||||||||||||||||||||    
T  3173461 tttgtaaacactgaatacaatcacaaacg 3173433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 4507469 - 4507341
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc 350  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||| |||||||| |||||||||||||||  ||| ||||||||||||    
T  4507469 aaaaccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggctttcacataacc 4507370  T
Q  351 tttgtcaacactgaatacaatcacaaacg 379  Q
    ||||| ||||| |||||||||||||||||    
T  4507369 tttgttaacaccgaatacaatcacaaacg 4507341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 4618859 - 4618731
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc 350  Q
    ||||||||||| |||| | ||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  4618859 aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc 4618760  T
Q  351 tttgtcaacactgaatacaatcacaaacg 379  Q
    ||||| ||||| |||||||||||||||||    
T  4618759 tttgttaacaccgaatacaatcacaaacg 4618731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 255 - 376
Target Start/End: Complemental strand, 4462761 - 4462640
Alignment:
Q  255 ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg 354  Q
    |||||||||||||| ||||||| |||| | ||||||||||||||| | ||||||||||||| ||| || |||||||||| ||||||||||||||||||||    
T  4462761 ccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataacctttg 4462662  T
Q  355 tcaacactgaatacaatcacaa 376  Q
    ||||||||||||||||||||||    
T  4462661 tcaacactgaatacaatcacaa 4462640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 249 - 379
Target Start/End: Complemental strand, 4482425 - 4482295
Alignment:
Q  249 aaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataa 348  Q
    |||||||||||||| ||||| | ||||| |||||||||||||||||||||| | ||||||||| ||| ||| || |||||||||| ||| ||||||||||    
T  4482425 aaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagaggctttcacataa 4482326  T
Q  349 cctttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||||||||| |||||||||||||||||    
T  4482325 cctttgtcaacaccgaatacaatcacaaacg 4482295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 249 - 379
Target Start/End: Complemental strand, 4576015 - 4575885
Alignment:
Q  249 aaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataa 348  Q
    ||||| |||||||| ||||||| ||||| ||||| |||||||||||||||| | ||||||||| ||||||| || |||||||||| ||| ||||||||||    
T  4576015 aaaaagccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataa 4575916  T
Q  349 cctttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||| |||||||||||||||||||||||    
T  4575915 cctttgttaacactgaatacaatcacaaacg 4575885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 379
Target Start/End: Original strand, 4265631 - 4265755
Alignment:
Q  255 ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg 354  Q
    |||||||||||||| ||||||  ||||  |||||||||||||||| | ||||| || |||| ||||||||||||||||| ||| ||||||||||||||||    
T  4265631 ccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacctttg 4265730  T
Q  355 tcaacactgaatacaatcacaaacg 379  Q
    |||||||||||||||||||||||||    
T  4265731 tcaacactgaatacaatcacaaacg 4265755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 379
Target Start/End: Original strand, 4488771 - 4488895
Alignment:
Q  255 ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg 354  Q
    |||||||| |||||||  |||| ||||| |||||||||||||||| | ||||||||||||| ||| || |||||||||| ||| ||||||||||||||||    
T  4488771 ccacatgcagtgttaacaccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacctttg 4488870  T
Q  355 tcaacactgaatacaatcacaaacg 379  Q
    |||||||||||||||||||||||||    
T  4488871 tcaacactgaatacaatcacaaacg 4488895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 379
Target Start/End: Complemental strand, 4517894 - 4517770
Alignment:
Q  255 ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg 354  Q
    |||||||| ||| ||| ||||||||||  |||||||||||||||| ||||||| ||||||||||| |||||||| |||| ||| ||||||||||||||||    
T  4517894 ccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttg 4517795  T
Q  355 tcaacactgaatacaatcacaaacg 379  Q
    ||||||| |||||||||||||||||    
T  4517794 tcaacaccgaatacaatcacaaacg 4517770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 4603668 - 4603540
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc 350  Q
    ||||| |||||||||||| ||||||||||||  |||||||||||||||| |  |||||||||||||||| ||  ||||||||| ||| ||||||||||||    
T  4603668 aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacc 4603569  T
Q  351 tttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||||||| |||||||||||||||||    
T  4603568 tttgtcaacaccgaatacaatcacaaacg 4603540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 247 - 379
Target Start/End: Complemental strand, 4623869 - 4623737
Alignment:
Q  247 ataaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacat 346  Q
    ||||||| |||||||||||||| ||| ||||||||| |||||| ||||||||| | ||||| |||||||||||||||||| |||||||||| ||||||||    
T  4623869 ataaaaagccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacat 4623770  T
Q  347 aacctttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||||   |||| |||||||||||||||||    
T  4623769 aacctttggtcacaccgaatacaatcacaaacg 4623737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 379
Target Start/End: Complemental strand, 4627704 - 4627580
Alignment:
Q  255 ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg 354  Q
    |||||||||||||| ||||||| ||||  |||||||||||||||| | ||||||| |||||||||  | |||||||||| ||| ||||||||||||||||    
T  4627704 ccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacctttg 4627605  T
Q  355 tcaacactgaatacaatcacaaacg 379  Q
    |||||||||||||||||||||||||    
T  4627604 tcaacactgaatacaatcacaaacg 4627580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 245 - 379
Target Start/End: Complemental strand, 4581578 - 4581444
Alignment:
Q  245 tgataaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcac 344  Q
    ||||||||| |||||||| ||||| ||||||||||||  |||||| ||||||| | | ||  | | ||||||||||||||||||||||| ||| ||||||    
T  4581578 tgataaaaagccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcac 4581479  T
Q  345 ataacctttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||||||||||||| |||||||||||||||||    
T  4581478 ataacctttgtcaacaccgaatacaatcacaaacg 4581444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 251 - 379
Target Start/End: Original strand, 4513549 - 4513677
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc 350  Q
    |||||||||||||||||| ||||||||||||  |||||||||||||||| |  |||| | | ||||||| || |||||||||| ||| ||||||||||||    
T  4513549 aaaaccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacc 4513648  T
Q  351 tttgtcaacactgaatacaatcacaaacg 379  Q
    ||||| ||||| |||||||||||||||||    
T  4513649 tttgttaacaccgaatacaatcacaaacg 4513677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 4594568 - 4594440
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc 350  Q
    |||||||||||||||||| ||||||  ||||  |||||| ||||| ||| | ||||| ||||| ||||| ||||||||||||| ||| ||||||||||||    
T  4594568 aaaaccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacc 4594469  T
Q  351 tttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||||||||||||||||||| |||||    
T  4594468 tttgtcaacactgaatacaatcataaacg 4594440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 4565587 - 4565459
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc 350  Q
    |||||||||||||||||| ||||||  ||||  |||||| ||||| ||| | ||||| ||||| ||||| ||||||||||||| ||| ||||| ||||||    
T  4565587 aaaaccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacc 4565488  T
Q  351 tttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||||||||||||||||||| |||||    
T  4565487 tttgtcaacactgaatacaatcataaacg 4565459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 361
Target Start/End: Complemental strand, 4569607 - 4569518
Alignment:
Q  272 tccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacac 361  Q
    ||||||||||  |||||||||||||||| | || |||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  4569607 tccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacac 4569518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 379
Target Start/End: Complemental strand, 4562204 - 4562091
Alignment:
Q  267 ttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataa-cctttgtcaacactgaa 365  Q
    |||| ||||| ||||| |||||| ||||||||| | ||||||||| ||||||| || |||||||| | ||| |||||||||| ||||||| |||||||||    
T  4562204 ttaactccatttccagttcaaggtcatatcaatgcattgttgaaaatagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaa 4562105  T
Q  366 tacaatcacaaacg 379  Q
    ||||||||||||||    
T  4562104 tacaatcacaaacg 4562091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 379
Target Start/End: Complemental strand, 4599758 - 4599593
Alignment:
Q  212 ctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaa 311  Q
    |||||||||||||||||||  |||| ||||||||| |||||||| |||||| || || |||||||  |||  ||||||  ||||||||   ||  | |||    
T  4599758 ctcaacattcaaacacaaa--ctcacaaatgagtggtaaaaaactacatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaa 4599661  T
Q  312 ctagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||||| |||||||||||| ||| ||| |||||||||| || ||||| || ||||||||||||||    
T  4599660 ctagcaaagattcttcaccttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacg 4599593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 4572788 - 4572706
Alignment:
Q  21 ataaactttttaatgaaaaattgttttccttctat-----aacaaaaagtggtgacttgacaagtatgtatcaattattgtgt 98  Q
    ||||||||||||||||||||||||||||||||| |     ||||||||||||||||||||| |||||| ||||||||||||||    
T  4572788 ataaactttttaatgaaaaattgttttccttctctcacgtaacaaaaagtggtgacttgactagtatgcatcaattattgtgt 4572706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 4587310 - 4587258
Alignment:
Q  21 ataaactttttaatgaaaaattgttttccttctataacaaaaagtggtgactt 73  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  4587310 ataaactttttaatgaaaaattgatttccttttataacaaaaagtggtcactt 4587258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 337
Target Start/End: Original strand, 4255395 - 4255477
Alignment:
Q  255 ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaagg 337  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||   || || |||||||||||  | ||||| ||||||||    
T  4255395 ccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaagg 4255477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 4502951 - 4502991
Alignment:
Q  339 tttcacataacctttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  4502951 tttcacataacctttgtcaacaccgaatacaatcacaaacg 4502991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 4493463 - 4493415
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaat 299  Q
    |||||||||||| ||||| ||||||| |||||||||||| |||||||||    
T  4493463 aaaaccacatgcagtgttgattccatttccagctcaaggtcatatcaat 4493415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 333
Target Start/End: Original strand, 4497813 - 4497897
Alignment:
Q  249 aaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcacctta 333  Q
    ||||| |||||||| ||||||| ||||| ||||  | |||||||||||||| | ||||||||||||| |||  | ||||||||||    
T  4497813 aaaaagccacatgcagtgttaactccatttccaatttaaggccatatcaatccattgttgaaactaggaaaattacttcacctta 4497897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 4472664 - 4472616
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaat 299  Q
    |||||||||||| ||||| ||||||| |||| | |||||||||||||||    
T  4472664 aaaaccacatgcagtgttgattccatgtccaccccaaggccatatcaat 4472616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 249 - 379
Target Start/End: Complemental strand, 2384 - 2254
Alignment:
Q  249 aaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataa 348  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| | || || ||||||||||||||||||||||||| ||| ||||||||||    
T  2384 aaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataa 2285  T
Q  349 cctttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||||||||||||||||||||| |||||    
T  2284 cctttgtcaacactgaatacaatcataaacg 2254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 251 - 379
Target Start/End: Original strand, 2021 - 2149
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc 350  Q
    ||||||||||| |||| | ||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  2021 aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc 2120  T
Q  351 tttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||||||||||||||||||| |||||    
T  2121 tttgtcaacactgaatacaatcataaacg 2149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 1282991 - 1282863
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc 350  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| || |||||||||| ||| ||| ||||||||    
T  1282991 aaaaccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc 1282892  T
Q  351 tttgtcaacactgaatacaatcacaaacg 379  Q
    ||||| || ||||||||||||||||||||    
T  1282891 tttgttaatactgaatacaatcacaaacg 1282863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 35776322 - 35776276
Alignment:
Q  333 aaaggttttcacataacctttgtcaacactgaatacaatcacaaacg 379  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||||    
T  35776322 aaaggttttcacataacctttgtgaacactgaattcaaccacaaacg 35776276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 35842126 - 35842083
Alignment:
Q  336 ggttttcacataacctttgtcaacactgaatacaatcacaaacg 379  Q
    |||||||||||||||||||| |||||||||| ||| ||||||||    
T  35842126 ggttttcacataacctttgtgaacactgaattcaaccacaaacg 35842083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 35854634 - 35854591
Alignment:
Q  336 ggttttcacataacctttgtcaacactgaatacaatcacaaacg 379  Q
    |||||||||||||||||||| |||||||||| ||| ||||||||    
T  35854634 ggttttcacataacctttgtgaacactgaattcaaccacaaacg 35854591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 35869243 - 35869200
Alignment:
Q  336 ggttttcacataacctttgtcaacactgaatacaatcacaaacg 379  Q
    |||||||||||||||||||| |||||||||| ||| ||||||||    
T  35869243 ggttttcacataacctttgtgaacactgaattcaaccacaaacg 35869200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 245 - 376
Target Start/End: Complemental strand, 3088309 - 3088178
Alignment:
Q  245 tgataaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcac 344  Q
    ||||||||| |||||||||||||| ||||||||||||  |||||| ||||| ||| | ||||| ||||||||||| ||||||||||||||||| ||||||    
T  3088309 tgataaaaagccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcac 3088210  T
Q  345 ataacctttgtcaacactgaatacaatcacaa 376  Q
    |||||||||||||| || ||||||||||||||    
T  3088209 ataacctttgtcaataccgaatacaatcacaa 3088178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 1316 - 1188
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc 350  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| ||| ||||||||| ||| | |||  |||||    
T  1316 aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc 1217  T
Q  351 tttgtcaacactgaatacaatcacaaacg 379  Q
    | |||||||||||||||||||||||||||    
T  1216 tatgtcaacactgaatacaatcacaaacg 1188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 1676079 - 1675951
Alignment:
Q  251 aaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc 350  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| ||| ||||||||| ||| | |||  |||||    
T  1676079 aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc 1675980  T
Q  351 tttgtcaacactgaatacaatcacaaacg 379  Q
    | |||||||||||||||||||||||||||    
T  1675979 tatgtcaacactgaatacaatcacaaacg 1675951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 249 - 379
Target Start/End: Original strand, 20862378 - 20862508
Alignment:
Q  249 aaaaaaccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataa 348  Q
    |||||||||||||| ||||||| ||||||||||  |||||| ||||||||| |  |||| ||||||||||| || |||||||||| ||| ||| ||||||    
T  20862378 aaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataa 20862477  T
Q  349 cctttgtcaacactgaatacaatcacaaacg 379  Q
    | |||||||| ||||||||||||||||||||    
T  20862478 catttgtcaatactgaatacaatcacaaacg 20862508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 258 - 379
Target Start/End: Complemental strand, 24104646 - 24104525
Alignment:
Q  258 catgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtca 357  Q
    ||||||||||| ||||||  ||||  |||||| ||||||||| | ||||| ||||||| ||||||||||||||||| ||| |||||||||||||| || |    
T  24104646 catgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataaccttcgtga 24104547  T
Q  358 acactgaatacaatcacaaacg 379  Q
    |||| |||||||||||||||||    
T  24104546 acaccgaatacaatcacaaacg 24104525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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