View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9555_low_8 (Length: 239)
Name: NF9555_low_8
Description: NF9555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9555_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8368163 - 8367939
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattctttcaaatgatggaaagttcaattcaagagaatatatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368163 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattctttcaaatgatggaaagttcaattcaagagaatatatta |
8368064 |
T |
|
| Q |
101 |
gaagaagatgaagaacaaagagaaaatggagatttgtttgaaattaaattggctttgaaattaggaagaagtttgtcacaattaagagatcttgctagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8368063 |
gaagaagatgaagaacaaagagaaaatggagatttgtttgaaattaaattggctttgaaattgggaagaagtttgtcacaattaagagatcttgctagaa |
8367964 |
T |
|
| Q |
201 |
aatcagcttattctcgtgttgaggg |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
8367963 |
aatcagcttattctcgtgttgaggg |
8367939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8401247 - 8401471
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattctttcaaatgatggaaagttcaattcaagagaatatatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401247 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattctttcaaatgatggaaagttcaattcaagagaatatatta |
8401346 |
T |
|
| Q |
101 |
gaagaagatgaagaacaaagagaaaatggagatttgtttgaaattaaattggctttgaaattaggaagaagtttgtcacaattaagagatcttgctagaa |
200 |
Q |
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| T |
8401347 |
gaagaagatgaagaacaaagagaaaatggagatttatttgaaattaaattggctttgaaattgggaagaagtttgtcacaattaagagatcttgctagaa |
8401446 |
T |
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| Q |
201 |
aatcagcttattctcgtgttgaggg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
8401447 |
aatcagcttattctcgtgttgaggg |
8401471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8422824 - 8423048
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattctttcaaatgatggaaagttcaattcaagagaatatatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422824 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattctttcaaatgatggaaagttcaattcaagagaatatatta |
8422923 |
T |
|
| Q |
101 |
gaagaagatgaagaacaaagagaaaatggagatttgtttgaaattaaattggctttgaaattaggaagaagtttgtcacaattaagagatcttgctagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
8422924 |
gaagaagatgaagaacaaagagaaaatggagatttgtttgaaattaaattggctttgaaattgggaagaagtttgtcacaattaagagatcttgctataa |
8423023 |
T |
|
| Q |
201 |
aatcagcttattctcgtgttgaggg |
225 |
Q |
| |
|
|||||||||| |||||||||||||| |
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| T |
8423024 |
aatcagcttactctcgtgttgaggg |
8423048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8376094 - 8376156
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattctt |
63 |
Q |
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|
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||| |
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| T |
8376094 |
ttttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctggtggtttctt |
8376156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8411912 - 8411863
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
50 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
8411912 |
ttttgagcatggtggacaagttggcatggtttttgaaatgtatagagctt |
8411863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8431063 - 8431014
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
50 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
8431063 |
ttttgagcatggtggacaagttggcatggtttttgaaatgtatagagctt |
8431014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8434010 - 8433961
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
50 |
Q |
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|
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
8434010 |
ttttgagcatggtggacaagttggcatggtttttgaaatgtatagagctt |
8433961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8405792 - 8405743
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
50 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
8405792 |
ttttgaacatggtggacaagttggcatggtttttgaaatgtatagagctt |
8405743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8395780 - 8395829
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagctt |
50 |
Q |
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|
|||||| |||||||||||| |||| ||||||| ||||||||||||||||| |
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|
| T |
8395780 |
ttttgaacatggtggacaaattggcatggtttttgaaatgtatagagctt |
8395829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8416993 - 8416952
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgta |
42 |
Q |
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|
|||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
8416993 |
ttttgagcatggtggacaagttggcatggtttttgaaatgta |
8416952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8403836 - 8403777
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt |
60 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||| ||||||||| ||||||||||| |
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|
| T |
8403836 |
ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt |
8403777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 55336151 - 55336092
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
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|
| T |
55336151 |
ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggatt |
55336092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 55330719 - 55330659
Alignment:
| Q |
1 |
ttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattc |
61 |
Q |
| |
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|||||| |||||||||||| |||||||||| | ||||||||||||| ||||||||||||| |
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| T |
55330719 |
ttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattc |
55330659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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