View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9556_high_1 (Length: 494)
Name: NF9556_high_1
Description: NF9556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9556_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 104 - 482
Target Start/End: Complemental strand, 17111305 - 17110925
Alignment:
| Q |
104 |
aaataatggtcattccaa--gtgagattagccactaaatgatccattcatgacccaaaatactgatcatacataacccaaaatccaaaatatgcaagtca |
201 |
Q |
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| T |
17111305 |
aaataatggtcattgcaaaagtgagattagccactaaatgatccatacatgacccaaaatactgatcatacatgacccaaaatccaaaatatgcaagtca |
17111206 |
T |
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| Q |
202 |
aagtaatagtggttatgtatctctaagagttgcaaatattctcatcaaataatttctcggtacatgacacacaatatgaaaccaacacttgaatcagaac |
301 |
Q |
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| T |
17111205 |
aagtaatagtggttatgtatctctaagagttgcaaatattctcatcaaataatttctcagtacatgacacacaatatgaaaccaacacttgaatcagaac |
17111106 |
T |
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| Q |
302 |
caaaaaccaacacttgaataagcaaaaagttcttcctgtaatgtttaagcaaaccaaagtctcactggatttccttctaacctgtattgcgaaaaaatca |
401 |
Q |
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| T |
17111105 |
caaaaaccaacacttgaataagcaaaaagttcttcctgtaatgtttaagcaaaccaaactctcactggatttccttctaacctgtattgcgaaaaaatca |
17111006 |
T |
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| Q |
402 |
aatggagcattcatcaatcaatatgaaatagcttatgcatgccttctaattctgaaataatcacatcatgaagagaataat |
482 |
Q |
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| T |
17111005 |
aatggagcattcatcaatcaatatgaaatagcttatgcatgccttttaattctgaaataatcacatcatgaagagaataat |
17110925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 17111392 - 17111356
Alignment:
| Q |
70 |
tggttagctacttgcttgttaacattggtcaagcaaa |
106 |
Q |
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| T |
17111392 |
tggttagctacttacttgttaacattggtcaagcaaa |
17111356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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