View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9556_high_2 (Length: 279)
Name: NF9556_high_2
Description: NF9556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9556_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 31225689 - 31225435
Alignment:
| Q |
9 |
agcagagaacccaagaggctccctaggcctagccaaaacagaaaagnnnnnnnnccaacacaacaggccttgctaatgcaacacagcagctgcacaggaa |
108 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31225689 |
agcacagaacccaaggggctccctaggcctagccaaaacagaaaagaaaaaaaaccaacacaacaggccttgctaatgcaacacagcagctgcacaggaa |
31225590 |
T |
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| Q |
109 |
aaaacaacaagtgttgtttgaacccacaaaatagcccccaaaaactcagcagcgaacaccaacaaccgacagaaacccgacaccagaaaaactgcagaac |
208 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31225589 |
aaaacagcaagtgttgtttgaacccacaaaatagcccccaaaaactcagcagcgaacaccaacaaccgacagaaacccgacaccaaaaaaactgcagaac |
31225490 |
T |
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| Q |
209 |
accgcatcacccaacacataacagcaccggatcagcttaagccattcgcaaaaga |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31225489 |
accgcatcacccaacacataacagcaccggatcagcttaagccattcgcaaaaga |
31225435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 41310269 - 41310408
Alignment:
| Q |
108 |
aaaaacaacaagtgttgtttgaacccacaaaatagcccccaaaaactcagcagcgaacaccaacaaccgacagaaacccgacaccagaaaaactgcagaa |
207 |
Q |
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||||||| || ||| ||||||||||| |||| |||||||||||||||||||| ||||| ||| ||| ||||||| ||| || || | ||||||||| | |
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| T |
41310269 |
aaaaacagcaggtgctgtttgaacccgcaaaggagcccccaaaaactcagcagagaacagcaa-aactgacagaataccggcagcaaagaaactgcagta |
41310367 |
T |
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| Q |
208 |
caccgcatcacccaacacataacagcaccggatcagcttaa |
248 |
Q |
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||||||| ||||||||||| ||||||||||| || ||||| |
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| T |
41310368 |
caccgcagcacccaacacaggacagcaccggagcaacttaa |
41310408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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