View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_high_13 (Length: 412)
Name: NF9557_high_13
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 1050044 - 1049654
Alignment:
| Q |
7 |
atggagttatatgttttctcctcagagacggggtcatggaaacgcgttgttatgaatattccggatggattcgcttttgctcctcattggctactaagtt |
106 |
Q |
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| T |
1050044 |
atggagttatatgttttctcctcagagacggggtcatggaaacgcgttgttatgattattccggatggattcgcttttgctcctcattggctactaagtt |
1049945 |
T |
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| Q |
107 |
tttcctatggtggaagcttgtatttcatggggaggacaagcatttttgtgtttgatccttatacaaacacaaaggatacccttaattatcccttagaagc |
206 |
Q |
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| T |
1049944 |
tttcctatggtggaagcttgtatttcatggggaggacaagcatttttgtgtttgatccttatacaaacacaagggatacccttaattatcccttagaagc |
1049845 |
T |
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| Q |
207 |
tgattcaatgaacataatgagttttggtttccttggaatctcttgtggttgtttgaggatagctgatattggacaaaataatttgagagtttgggaactt |
306 |
Q |
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| T |
1049844 |
tgattcaatgaacataatgagttttggtttccttggaatctcttgtggttgtttgaggatagctgatattggacaaaataatttgagagtttgggaactt |
1049745 |
T |
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| Q |
307 |
gttgaaaagaatcattgggatttgttacatagcattgacatatccnnnnnnntgtcaaagaaattttgtgctaattattataagaaggttg |
397 |
Q |
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| T |
1049744 |
gttgaaaagaatcattgggatttgttgcatagcattgacatatccaaaaaaatgtcaaagaaattttgtggtaattattataagaaggttg |
1049654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 42875531 - 42875198
Alignment:
| Q |
17 |
atgttttctcctcagagacggggtcatggaaacgcgttgttatgaatattccggatggattcgcttttgctcctcattggctactaagtttttcctatgg |
116 |
Q |
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| T |
42875531 |
atgttttctcctcaaagacagggcaatggaatcacattgttatgaaaattccgaagggcttcgcttttgctcctcattggcttctgagtttttcatactg |
42875432 |
T |
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| Q |
117 |
tggaagcttgtatttcatggggaggacaagcatttttgtgtttgatccttatacaaacacaaaggatacccttaattatcccttagaagctgattcaatg |
216 |
Q |
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| T |
42875431 |
tggaaagctgtatttcatggggagggcaaacatttttgtgtttgatccttattcaagaaaaaggtacactattaattatccatcggaagccgatgcgatg |
42875332 |
T |
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| Q |
217 |
aacataatgagttttggtttccttggaatctcttgtggttgtttgaggatagctgatattggacaaaataatttgagagtttgggaacttgttgaaaaga |
316 |
Q |
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|| ||| |||||| ||| || || || ||||||||| || |||||||||||||||||||| ||||| || |||||||||||||||||| ||||||||||| |
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| T |
42875331 |
aatatagtgagttgtgggtttctcgggatctcttgtagtcgtttgaggatagctgatattagacaacatgatttgagagtttgggaacatgttgaaaaga |
42875232 |
T |
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| Q |
317 |
atcattgggatttgttacatagcattgacatatc |
350 |
Q |
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|||| ||||||||||| ||| | ||||| ||||| |
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| T |
42875231 |
atcagtgggatttgttgcattgtattgatatatc |
42875198 |
T |
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