View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_high_14 (Length: 407)
Name: NF9557_high_14
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 31727618 - 31727232
Alignment:
| Q |
1 |
cttgaatattacggtagggtcacaatacattcacaatacactacagtataatagacttggatattatgtttagattcactctacaccacaaaattaagat |
100 |
Q |
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| T |
31727618 |
cttgaatattacggtagggtcacaatacattcacaatagactacagtataatagacttggatattatgtttagattcactctacaccacaaaattaagat |
31727519 |
T |
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| Q |
101 |
aatcattggatgtttagagtttaaacagctgataattctttgttgaatcttcttctctcacccaaaccaattttcttgatagagaccgagagagacatat |
200 |
Q |
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| T |
31727518 |
aatcattggatgtttagagtttaaacagctgataattctttgttgaatcttcttctctcacccaaaccaattttcttgatagagaccgagagagacatat |
31727419 |
T |
|
| Q |
201 |
gtttatatcaaattacgaatcactcataaagatacagacattaaacacaacactgatatgtcgagactaataataactctagaaacttaatgtaatcacg |
300 |
Q |
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| T |
31727418 |
gtttatatcaaattacgaatcactcataaagatacagacaccaaatacaacactgatatgtcgagactaataataactctagaaacttaatgtaatcaca |
31727319 |
T |
|
| Q |
301 |
tgtcggtgtcaagccattgtcggacacttgcacatttggatgcgtcagacatcgaacacgtcttctatcagaagtgtcgtgctacgt |
387 |
Q |
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| T |
31727318 |
tgtcggtgtcaagccattgtcggacacttgcacatttggatgcgtcaaacatcgaacacgtcttctatcagaagtgtcgtgctacgt |
31727232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 31720457 - 31720380
Alignment:
| Q |
51 |
atagacttggatattatgtttagattcactctacaccacaaaattaagataatcattggatgtttagagtttaaacagc |
129 |
Q |
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| T |
31720457 |
atagacttggattttatgat-aggttcatactacaccacaaaattaaaaatatcattggaaatttagagtttaaacagc |
31720380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 31714617 - 31714541
Alignment:
| Q |
52 |
tagacttggatattatgtttagattcactctacaccacaaaattaagataatcattggatgtttagagtttaaacagc |
129 |
Q |
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||||||||||||||||| | || |||| ||||||||||||||||| | |||| |||| ||||||||||||||||| |
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| T |
31714617 |
tagacttggatattatgat-aggttcatactacaccacaaaattaaaaatatcaatggaaatttagagtttaaacagc |
31714541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 186
Target Start/End: Complemental strand, 31720351 - 31720323
Alignment:
| Q |
158 |
tcacccaaaccaattttcttgatagagac |
186 |
Q |
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| T |
31720351 |
tcacccaaaccaattttcttgatagagac |
31720323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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