View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9557_high_19 (Length: 385)
Name: NF9557_high_19
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_high_19 |
 | |
|
| [»] scaffold0719 (1 HSPs) |
| | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 15124152 - 15124516
Alignment:
| Q |
17 |
agaatgtttatctgagccactattagctcnnnnnnntgaaactgcacaaactgaattaggtcatgctacttttcttagcaagttgattttctcttgggtt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15124152 |
agaatgtttatctgagccactattagctcaaaaaaatgaaactgcacaaactgaattaggtcatgctacttttcttagcaagttgattttctcttgggtt |
15124251 |
T |
|
| Q |
117 |
aattcattactcagtttaggttactcaaagccactagctcttgaagacattccttcccttgtttctgaagatgaagcaaacatggcttataaaaaatttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15124252 |
aattcattactcagtttaggttactcaaagccactagctcttgaagacattccttcccttgtttctgaagatgaagcaaacatggcttataaaaaatttg |
15124351 |
T |
|
| Q |
217 |
ttcatgcttgggaatcacttgttagagagaggactaagaacaatacaaagagtttggttctttggtctatagttagatcatacctaaaagaaaacatatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15124352 |
ttcatgcttgggaatcacttgttagagagaggactaagaacaatacaaagagtttggttctttggtctatagttagatcatacctaaaagaaaacatatt |
15124451 |
T |
|
| Q |
317 |
aatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatactctatgctt |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15124452 |
aatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatactctatgctt |
15124516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 62 - 381
Target Start/End: Complemental strand, 14951470 - 14951151
Alignment:
| Q |
62 |
acaaactgaattaggtcatgctacttttcttagcaagttgattttctcttgggttaattcattactcagtttaggttactcaaagccactagctcttgaa |
161 |
Q |
| |
|
|||||| ||| || |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
14951470 |
acaaacagaactaagtcatgctacttttctcagcaagttgattttctcttgggttaactctctactcagtttaggttacacaaaggctttagctcttgaa |
14951371 |
T |
|
| Q |
162 |
gacattccttcccttgtttctgaagatgaagcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggactaagaacaata |
261 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||| || || |||||||| ||||| ||||| |||||||||||| ||| |
|
|
| T |
14951370 |
gacattccttctcttgtttctgaagatgaagcagacatggcctatcaaaaatttgcgcaagcatgggaatcccttgtaagagaaaggactaagaacgata |
14951271 |
T |
|
| Q |
262 |
caaagagtttggttctttggtctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttc |
361 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14951270 |
cgaagagtttggttctttggtctatagttagatcttacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttc |
14951171 |
T |
|
| Q |
362 |
acctctaatactctatgctt |
381 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
14951170 |
acctctgatactctatgctt |
14951151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 80 - 381
Target Start/End: Original strand, 5304966 - 5305267
Alignment:
| Q |
80 |
tgctacttttcttagcaagttgattttctcttgggttaattcattactcagtttaggttactcaaagccactagctcttgaagacattccttcccttgtt |
179 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
5304966 |
tgctacctttctcagcaagttaattttctcttgggttaattctttactcagttttggttactcaaagccattagatcttgaagacataccttcccttgtt |
5305065 |
T |
|
| Q |
180 |
tctgaagatgaagcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggactaagaacaatacaaagagtttggttcttt |
279 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
5305066 |
tctgaagatgaagcagacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggacaaagaataatacaaagagtttggttcttt |
5305165 |
T |
|
| Q |
280 |
ggtctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatactctatgc |
379 |
Q |
| |
|
|||||||||| ||| | | | |||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||| |
|
|
| T |
5305166 |
ggtctatagtaagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaactatttcggttgccatttcacctcttatactctatgc |
5305265 |
T |
|
| Q |
380 |
tt |
381 |
Q |
| |
|
|| |
|
|
| T |
5305266 |
tt |
5305267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 73 - 381
Target Start/End: Complemental strand, 5284644 - 5284336
Alignment:
| Q |
73 |
taggtcatgctacttttcttagcaagttgattttctcttgggttaattcattactcagtttaggttactcaaagccactagctcttgaagacattccttc |
172 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
5284644 |
taggccatgctacttttctcagcaagttgattttctcttgggttaattctctactcagattaggttactcaaagccactagatcttgaagacataccttc |
5284545 |
T |
|
| Q |
173 |
ccttgtttctgaagatgaagcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggactaagaacaatacaaagagtttg |
272 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||| | ||| ||||| ||||||||||||||| |
|
|
| T |
5284544 |
ccttgtttctgaagatgaagcagacatggcttatcaaaaattcgttcgtgcttgggaatcacttgttagagacaagacaaagaataatacaaagagtttg |
5284445 |
T |
|
| Q |
273 |
gttctttggtctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatac |
372 |
Q |
| |
|
||||||||||||||| ||||| | | | |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
5284444 |
gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaactatttctgctgtagtttcacctcttatac |
5284345 |
T |
|
| Q |
373 |
tctatgctt |
381 |
Q |
| |
|
| ||||||| |
|
|
| T |
5284344 |
tttatgctt |
5284336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 53 - 381
Target Start/End: Complemental strand, 5292159 - 5291831
Alignment:
| Q |
53 |
tgaaactgcacaaactgaattaggtcatgctacttttcttagcaagttgattttctcttgggttaattcattactcagtttaggttactcaaagccacta |
152 |
Q |
| |
|
||||||| |||||| | |||||| | ||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| || |
|
|
| T |
5292159 |
tgaaactaaacaaacaggattaggccgtgctacttttcttagcaagttgaatttctcttggattaattctttactcagtttaggttactcaaagccgctt |
5292060 |
T |
|
| Q |
153 |
gctcttgaagacattccttcccttgtttctgaagatgaagcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggacta |
252 |
Q |
| |
|
| ||||||||| || |||||| ||||||||||||||||||| ||||| | ||| ||||||||||| ||||||||||||||||||| ||||||||||| | |
|
|
| T |
5292059 |
gatcttgaagatataccttccgttgtttctgaagatgaagctgacatgtcgtatcaaaaatttgttaatgcttgggaatcacttgtgagagagaggacaa |
5291960 |
T |
|
| Q |
253 |
agaacaatacaaagagtttggttctttggtctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgt |
352 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | | | | ||||||||||||||||||||||||||||||||||| |||||| | | || |
|
|
| T |
5291959 |
agaataatacaaagagtttggttctttggtctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgtttcggt |
5291860 |
T |
|
| Q |
353 |
tgtagtttcacctctaatactctatgctt |
381 |
Q |
| |
|
|| |||||||||||| ||||||||||||| |
|
|
| T |
5291859 |
tgcagtttcacctcttatactctatgctt |
5291831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 80 - 381
Target Start/End: Original strand, 5312178 - 5312479
Alignment:
| Q |
80 |
tgctacttttcttagcaagttgattttctcttgggttaattcattactcagtttaggttactcaaagccactagctcttgaagacattccttcccttgtt |
179 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| | |
|
|
| T |
5312178 |
tgctacctttctcagcaagttgattttctcttgggttaattctttactcagtttaggttactcaaagccattagatcttgaagacataccttcccttgct |
5312277 |
T |
|
| Q |
180 |
tctgaagatgaagcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggactaagaacaatacaaagagtttggttcttt |
279 |
Q |
| |
|
||||||||||||||| ||||| | ||| |||| |||| ||||| ||||| || ||||| ||||||| ||| | || ||| | | ||| |||||||||| |
|
|
| T |
5312278 |
tctgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagagagaagacagataaaaattccaggagcttggttcttt |
5312377 |
T |
|
| Q |
280 |
ggtctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatactctatgc |
379 |
Q |
| |
|
||||| | ||||| | ||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5312378 |
ggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattaatcagaactatttctgttgtagtttcacctctaatactctatgc |
5312477 |
T |
|
| Q |
380 |
tt |
381 |
Q |
| |
|
|| |
|
|
| T |
5312478 |
tt |
5312479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 79 - 381
Target Start/End: Complemental strand, 31528135 - 31527833
Alignment:
| Q |
79 |
atgctacttttcttagcaagttgattttctcttgggttaattcattactcagtttaggttactcaaagccactagctcttgaagacattccttcccttgt |
178 |
Q |
| |
|
||||||| || || |||||||| |||||||||||||||| || || || |||||||| ||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
31528135 |
atgctaccttgctcagcaagttagttttctcttgggttaactctttgcttagtttaggatactcaaagccactagctcttgaagacatacctacccttgt |
31528036 |
T |
|
| Q |
179 |
ttctgaagatgaagcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggactaagaacaatacaaagagtttggttctt |
278 |
Q |
| |
|
|||||||||||||||||||| || ||| |||| ||||| |||| ||||| || |||| || |||||| |||||||| |||||| | |||||||||| |
|
|
| T |
31528035 |
ttctgaagatgaagcaaacactgcgtatcaaaattttgtgcatgaatgggagtctcttggaaggaagaggagtaagaacagtacaaaaaatttggttctt |
31527936 |
T |
|
| Q |
279 |
tggtctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatactctatg |
378 |
Q |
| |
|
||||||||||||| | | ||| || |||||||||||||||||||||| |||||| || |||||||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
31527935 |
tggtctatagttaaaacttacttacaagaaaacatattaatagcattctatgcactactcagaactatttctgttgtagttttacctctaattctctatg |
31527836 |
T |
|
| Q |
379 |
ctt |
381 |
Q |
| |
|
||| |
|
|
| T |
31527835 |
ctt |
31527833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 133 - 292
Target Start/End: Complemental strand, 21109382 - 21109216
Alignment:
| Q |
133 |
taggttactcaaagccactagctcttgaagacattccttcccttgtttctgaagatgaagcaaacatggcttataaaaaatttgttcatgcttgggaatc |
232 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
21109382 |
taggttactcaaagccactagttcttgaagaagtcgattcccttgtttttgaagatgaagcaaacagggcttatcaaaaatttgttcttgcttgggaatc |
21109283 |
T |
|
| Q |
233 |
a-----cttgttagagagaggactaagaaca--atacaaagagtttggttctttggtctatagttag |
292 |
Q |
| |
|
| ||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||| |
|
|
| T |
21109282 |
acttagcttgttagagagaggactaagaataatatacaaagagtttggttctttggactgtagttag |
21109216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 193 - 370
Target Start/End: Complemental strand, 21264148 - 21263965
Alignment:
| Q |
193 |
caaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagag------agaggactaagaacaatacaaagagtttggttctttggtctat |
286 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||| ||||||||| ||||| || | | |
|
|
| T |
21264148 |
caaacatggcttgtaaaaaatttgttcatgattgggaataacttgttagagttagagagaggactttgaacaatactaagagtttgtatcttttgtttgt |
21264049 |
T |
|
| Q |
287 |
agttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaat |
370 |
Q |
| |
|
||||||| | || ||| || |||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
21264048 |
agttagaacttagctataatccaacatattaatagcattttatgaattaatcagaactatttctattgtagtttcacctctaat |
21263965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 191 - 377
Target Start/End: Complemental strand, 21260278 - 21260087
Alignment:
| Q |
191 |
agcaaacatggcttataaaaaattt-gttcatgcttgggaatcacttgttagagagaggactaagaacaatacaaagagtttggttctttggtctatagt |
289 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||||| | || ||| || ||||||||| | |||| ||||||||||||||||||||||||||| |
|
|
| T |
21260278 |
agcaaacatggcttataattatttttgttcatgcttgggaattagtttttaaagggaggactaattataataaaaagagtttggttctttggtctatagt |
21260179 |
T |
|
| Q |
290 |
tagatcatacctaa----aagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatactctat |
377 |
Q |
| |
|
|||| | ||| || ||||||||| ||||| || ||||||||||||| ||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
21260178 |
tagaacttactaaaaattaagaaaacacattaaaagtattttatgcattacacagaactattgttgttgtagtttgacctctaatactctat |
21260087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 21177788 - 21177722
Alignment:
| Q |
314 |
attaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatactctatgct |
380 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
21177788 |
attaatggcattttatgcattaatcagaactatatctgttttagtttcacctctaatactctatgct |
21177722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 346
Target Start/End: Complemental strand, 33722900 - 33722788
Alignment:
| Q |
223 |
cttgggaatcacttgttagagagaggactaagaacaatacaaagagtttggttctttggtctatagttagatcatacctaaaagaaaacatattaatagc |
322 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| || |||||||| || | |||||||||||| | |
|
|
| T |
33722900 |
cttgggaatcacttgttggagagaggaccaagaacaatacaaagagtttagttctttggactgtagttaga--atcc---------aacatattaatatc |
33722812 |
T |
|
| Q |
323 |
attttatgcattaatcagaactat |
346 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33722811 |
attttatgcattaatcagaactat |
33722788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 21197746 - 21197645
Alignment:
| Q |
98 |
gttgattttctcttgggttaattcattactcagtt---taggttactcaaagccactagctcttgaagacattccttcccttgtttctgaagatgaagca |
194 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||| |||||||||||||| |||||| ||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
21197746 |
gttgattttctcattggttaattctttactcagttaattaggttactcaaagacactagatcttgaagaaatctattcccttgtttctgaagatgaagca |
21197647 |
T |
|
| Q |
195 |
aa |
196 |
Q |
| |
|
|| |
|
|
| T |
21197646 |
aa |
21197645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 371
Target Start/End: Complemental strand, 21297930 - 21297818
Alignment:
| Q |
258 |
aatacaaagagtttggttctttggtctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtag |
357 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||||||| || ||| || ||||||||||||||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
21297930 |
aatacaaagaatttggtt-tttggtctgtagttagagtttagctataatccaacatattaatagcagtttatgcataaatcagaactatctctgttgtag |
21297832 |
T |
|
| Q |
358 |
tttcacctctaata |
371 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
21297831 |
tttcacatctaata |
21297818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 21109210 - 21109146
Alignment:
| Q |
309 |
aacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatact |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || ||| |||| ||||||||||| |||| |
|
|
| T |
21109210 |
aacatattaatagcattttatgcattaatcataattacttctgctgtaatttcacctctattact |
21109146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 21297967 - 21297929
Alignment:
| Q |
173 |
ccttgtttctgaagatgaagcaaacatggcttataaaaa |
211 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
21297967 |
ccttgtttctgaagatgaaacaaacatggtttataaaaa |
21297929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 191 - 323
Target Start/End: Complemental strand, 6038 - 5899
Alignment:
| Q |
191 |
agcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggactaaga---acaataca----aagagtttggttctttggtc |
283 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||||||||||||||| | ||||||||| || | |||||| |||||| ||||||||||||| |
|
|
| T |
6038 |
agcaaacatgacttacaaaaaatttgttcaagcttgggaatcacttgttataaagaggactaggaattataatacagattaagagtatggttctttggtc |
5939 |
T |
|
| Q |
284 |
tatagttagatcatacctaaaagaaaacatattaatagca |
323 |
Q |
| |
|
| |||||||| | || |||||||||||||| |||||||| |
|
|
| T |
5938 |
tctagttagaactaacttaaaagaaaacataataatagca |
5899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 191 - 323
Target Start/End: Original strand, 39626 - 39765
Alignment:
| Q |
191 |
agcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggactaaga---acaataca----aagagtttggttctttggtc |
283 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| || | |||||| |||||| ||||||||||||| |
|
|
| T |
39626 |
agcaaacatggcttacaaaaaatttgttcaagcttgggaatcacttgttagaaagaggactaggaattataatacaaattaagagtatggttctttggtc |
39725 |
T |
|
| Q |
284 |
tatagttagatcatacctaaaagaaaacatattaatagca |
323 |
Q |
| |
|
| ||||||| | || |||||||||||||| ||| |||| |
|
|
| T |
39726 |
tgcagttagaactaacttaaaagaaaacataataacagca |
39765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 323
Target Start/End: Original strand, 61187 - 61327
Alignment:
| Q |
191 |
agcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggactaagaa----caataca----aagagtttggttctttggt |
282 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||| |||||||||| ||| ||||| ||| |||||| |||||| |||||||||||| |
|
|
| T |
61187 |
agcaaacatggcttacaaaaaatttgttcaagcttgggaattacttgttagaaagatgactaggaattataaatacaaattaagagtatggttctttggt |
61286 |
T |
|
| Q |
283 |
ctatagttagatcatacctaaaagaaaacatattaatagca |
323 |
Q |
| |
|
| |||||||| | || |||||||||||||| |||||||| |
|
|
| T |
61287 |
ttgtagttagaactaacttaaaagaaaacataataatagca |
61327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 11831831 - 11831753
Alignment:
| Q |
133 |
taggttactcaaagccactagctcttgaagacattccttcccttgtttctgaagatgaagcaaacatggcttataaaaa |
211 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11831831 |
taggttacacaaagccactagttcttgaagaaatcaattcccttgtttttgaagatgaagcaaacatggcttataaaaa |
11831753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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