View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_high_22 (Length: 338)
Name: NF9557_high_22
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 31390532 - 31390839
Alignment:
| Q |
18 |
caaaatgaactttatcttcatgagttgtaaaattagatatccgcagaaaaaatataaaagatcaacttcgaaaccaaagtgac-tctgctttgacaaacc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31390532 |
caaaatgaactttatcttcatgagttgtaaaattagatatccgca-aaaaaatataaaagatcaacttcgaaaccaaagtgacctctgctttgacaaacc |
31390630 |
T |
|
| Q |
117 |
aagtgacgtgatagcaaaagcggcaccggaaaccaaactgtacacatctggttttccgttagctttatcaaagaaaaaggagtaaacagttgttattgtg |
216 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31390631 |
aagtgacatgatagcaaaagcggcaccggaaaccaaactgtacacatctggttttccgttagctttatcaaagaaaaaggagtaaactgttgttattgtg |
31390730 |
T |
|
| Q |
217 |
aaaatagagaataccaaatgagctctaagcctgagacttggtgagttttgccatttgtttgcaaaaaagatggctagacaaataatgaaactgaaaacag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
31390731 |
aaaatagagaataccaaatgagctctaagcctgagacttggtgagttttgccatttgtttgcaaaaaagatggcaaggcaaataatgaaactgaaaacag |
31390830 |
T |
|
| Q |
317 |
tgtagagaa |
325 |
Q |
| |
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|||| |||| |
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| T |
31390831 |
tgtacagaa |
31390839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 73 - 331
Target Start/End: Original strand, 31462778 - 31463035
Alignment:
| Q |
73 |
aaaagatcaacttcgaaaccaaagtgactctgctttgacaaaccaagtgacgtgatagcaaaagcggcaccggaaaccaaactgtacacatctggttttc |
172 |
Q |
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| T |
31462778 |
aaaagatcaacttcgaaaccaaagtgactctgctttgacaaaccaagtgacattatagcaaaagccgcaccggaaaccaaactgtacacatctggttttc |
31462877 |
T |
|
| Q |
173 |
cgttagctttatcaaagaaaaaggagtaaacagttgttattgtgaaaatagagaataccaaatgagctctaagcctgagacttggtgagttttgccattt |
272 |
Q |
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| T |
31462878 |
cgttatctttatcaaagaaaaacgagtaaacaaatgttattgtgaaaataga-aatacgaaataagctgtgagccggaaacttggctagttctgccattt |
31462976 |
T |
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| Q |
273 |
gtttgcaaaaaagatggctagacaaataatgaaactgaaaacagtgtagagaattatct |
331 |
Q |
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||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||| |
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| T |
31462977 |
gtttgcaaaaatgattgcaagacaaataatgaaactgaaaacagtgtagagaataatct |
31463035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 28 - 313
Target Start/End: Original strand, 31387510 - 31387798
Alignment:
| Q |
28 |
tttatcttcatgagttgtaaaattagatatccgcagaaaaaatataaaagatcaacttcgaaaccaaagtgactctgctttgacaaaccaagtgacgtga |
127 |
Q |
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||||||||||| ||||||||| ||| ||||||||| |||||||||| |||||||||||||| || |||||| | ||||||||||||| || ||| ||| |
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| T |
31387510 |
tttatcttcatcagttgtaaagttaaatatccgcaaaaaaaatataggagatcaacttcgaatccgaagtgagtttgctttgacaaactgagagacatga |
31387609 |
T |
|
| Q |
128 |
tagcaaaagcggcaccggaaaccaaactgtacacatctggttttccgttagctttatcaaagaaaaaggagtaaacagttgttattgtgaaaatagagaa |
227 |
Q |
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| T |
31387610 |
tggcaaaagcagcacaggaaatcagactgtacaaatctggttttccgttagctttatcaaaaaagaaggagtaaacagtggtgattatgaaaaccgaaaa |
31387709 |
T |
|
| Q |
228 |
taccaaatgagctctaagcctgagacttg-gt--gagttttgccatttgtttgcaaaaaagatggctagacaaataatgaaactgaaaa |
313 |
Q |
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|||||||||||| |||| ||||| | || ||||||||||||||||||||||| ||||||| || || |||| ||||||||||| |
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| T |
31387710 |
caccaaatgagctttaagtggaagactagtgttcgagttttgccatttgtttgcaaacaagatggtgaggcagataacgaaactgaaaa |
31387798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 28 - 314
Target Start/End: Original strand, 31460074 - 31460363
Alignment:
| Q |
28 |
tttatcttcatgagttgtaaaattagatatccgcagaaaaaatataaaagatcaacttcgaaaccaaagtgactctgctttgacaaaccaagtgacgtga |
127 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||| ||||| |||| |||||||||||||| || |||||| | ||||||||||||| || ||| ||| |
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| T |
31460074 |
tttatcttcatcagttgtaaagttaaatatccgcaaaaaaagtataggagatcaacttcgaatccgaagtgagtttgctttgacaaactgagagacatga |
31460173 |
T |
|
| Q |
128 |
tagcaaaagcggcaccggaaaccaaactgtacacatctggttttccgttagctttatcaaagaaaaaggagtaaacagttgttattgtgaaaa-tagaga |
226 |
Q |
| |
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|||||||| |||||||||| | |||||||| ||||||||||||||||||||||||||| || |||||||||||||| || ||| |||||| ||| | |
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| T |
31460174 |
cggcaaaagcagcaccggaaattagactgtacaaatctggttttccgttagctttatcaaaaaagaaggagtaaacagtggtgattatgaaaaccaga-a |
31460272 |
T |
|
| Q |
227 |
ataccaaatgagctctaagcctgagacttg-gt--gagttttgccatttgtttgcaaaaaagatggctagacaaataatgaaactgaaaac |
314 |
Q |
| |
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| || ||||||||| |||| ||||| | || ||||||||||||||||||||||| |||||||| || || | |||||| |||||||| |
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| T |
31460273 |
aaactaaatgagctttaagtggaagactagtgttcgagttttgccatttgtttgcaaacaagatggcgaggcagaaaatgaacctgaaaac |
31460363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 279
Target Start/End: Original strand, 31464803 - 31464921
Alignment:
| Q |
161 |
catctggttttccgttagctttatcaaagaaaaaggagtaaacagttgttattgtgaaaatagagaataccaaatgagctctaagcctgagacttggtga |
260 |
Q |
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||||||||||| | |||||||||||||||||||| ||||||| ||| || |||||||||| || | | ||||||||||||| | |||||||||||| || |
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| T |
31464803 |
catctggttttgcattagctttatcaaagaaaaatgagtaaatagtagtgattgtgaaaactgaaactgccaaatgagctctgaacctgagacttggcga |
31464902 |
T |
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| Q |
261 |
gttttgccatttgtttgca |
279 |
Q |
| |
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||||||||| || ||||| |
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| T |
31464903 |
tttttgccatgtgattgca |
31464921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 331
Target Start/End: Complemental strand, 31483903 - 31483752
Alignment:
| Q |
180 |
tttatcaaagaaaaaggagtaaacagttgttattgtgaaaatagagaataccaaatgagctctaagcctgagacttggtgagttttgccatttgtttgca |
279 |
Q |
| |
|
||||||||||| | ||||||||| |||||| |||||||||| | ||| ||||||||||||| | ||| |||||||| || |||||||| |||||||| |
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| T |
31483903 |
tttatcaaagatataggagtaaatagttgtgattgtgaaaactaaaaatgccaaatgagctctgaacctaagacttggcgacgtttgccatatgtttgca |
31483804 |
T |
|
| Q |
280 |
aaaaagatggctagacaaataatgaaactgaaaacagtgtagagaattatct |
331 |
Q |
| |
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| || || | || ||||||||||||||||||||||| |||||||||| |
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| T |
31483803 |
atcaaatccgcgatgcagataatgaaactgaaaacagtgtaaagaattatct |
31483752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 31384133 - 31384237
Alignment:
| Q |
31 |
atcttcatgagttgtaaaattagatatccgcagaaaaaatataaaagatcaacttcgaaaccaaagtgactctgctttgacaaaccaagtgacgtgatag |
130 |
Q |
| |
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||||||||||| |||||| ||| | ||||||||||||||||||| |||||||| || || | |||||| | || |||||||||||||| || |||||| |
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| T |
31384133 |
atcttcatgagctgtaaagttaaacatccgcagaaaaaatataagagatcaacctcaaattcgaagtgagtttgttttgacaaaccaagatacatgatag |
31384232 |
T |
|
| Q |
131 |
caaaa |
135 |
Q |
| |
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||||| |
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| T |
31384233 |
caaaa |
31384237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 31475921 - 31475957
Alignment:
| Q |
295 |
caaataatgaaactgaaaacagtgtagagaattatct |
331 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||| |
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| T |
31475921 |
caaatgatgaaactgaaaacagtgtaaagaattatct |
31475957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 40843303 - 40843339
Alignment:
| Q |
295 |
caaataatgaaactgaaaacagtgtagagaattatct |
331 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||| |
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|
| T |
40843303 |
caaatgatgaaactgaaaacagtgtaaagaattatct |
40843339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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