View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_high_25 (Length: 326)
Name: NF9557_high_25
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 142 - 307
Target Start/End: Complemental strand, 50559174 - 50559009
Alignment:
| Q |
142 |
aattcaatcacaattcgtttcgtttgattctatttaaacaatttgttggttccgattctgattttgaacaggtgtattgagtgccgacgtttatgctcgt |
241 |
Q |
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| T |
50559174 |
aattcaatcgcaattcgtctcgtttgattctatttaaacaatttgttggttccgattctgattttgaacaggtgtgttgagtgccgacgtttatgctcgt |
50559075 |
T |
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| Q |
242 |
tactgtcgacttaggggttacaatgttctctacatttgtggtactgatgagtatggtactccaatt |
307 |
Q |
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| T |
50559074 |
tactgtcgacttaggggttacaatgttctctacatttgtggtactgatgagtatggtactccaatt |
50559009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 50559303 - 50559188
Alignment:
| Q |
1 |
aggttccggtggaaggaaaacggaacatcctcatcactagtgcacttccttatgttaacaacgttcctcatctcggcaacatcattggatgtatgtcact |
100 |
Q |
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| T |
50559303 |
aggttccggtggaaggaaaacggaacatcctcatcacaagtgcacttccttatgtcaacaacgttcctcatctcggcaacatcattggatgtatgtcact |
50559204 |
T |
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| Q |
101 |
tacttcgattgaaact |
116 |
Q |
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| T |
50559203 |
tacttcgattgaaact |
50559188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 29774798 - 29774711
Alignment:
| Q |
210 |
caggtgtattgagtgccgacgtttatgctcgttactgtcgacttaggggttacaatgttctctacatttgtggtactgatgagtatgg |
297 |
Q |
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| T |
29774798 |
caggtgtgttgagtgctgatgtgtttgctcgatactgtcgtcttaggggttacaatgcgatttacatctgtggtaccgatgagtatgg |
29774711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 29774958 - 29774922
Alignment:
| Q |
57 |
aacaacgttcctcatctcggcaacatcattggatgta |
93 |
Q |
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| T |
29774958 |
aacaacgtccctcatctcggcaacatcattggatgta |
29774922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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