View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_high_28 (Length: 301)
Name: NF9557_high_28
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_high_28 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 7143 - 7414
Alignment:
| Q |
20 |
cagagaatgctagctcagcacgttgaagctccaagtcagtgcagaaacttttcctgccacaaatttagtgcagagaagaaaatgaatcaacaagccggaa |
119 |
Q |
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| T |
7143 |
cagagaatgctagctcagcacgttgaagctccaagtcggtgcagaaacttttcctgccacaaatttagtgcagagaagaaaatgaatcaacaagccggaa |
7242 |
T |
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| Q |
120 |
agttgattgaagaataattaaacactaattcaacatagctagtatgaaatgcttcaaagatgtggtattacataacaccatcctccattatctgtgtata |
219 |
Q |
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| T |
7243 |
agttgattgaagaataattaaacactaattcaacatagctagtatgaaatgcttcaaagatgtggtattacataacaccatcctccattatctgtgtata |
7342 |
T |
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| Q |
220 |
ctaattgaatctatttgttgctattgactctcatttgaacctatgcactattcagataatgtagaatctctg |
291 |
Q |
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| T |
7343 |
ctaattgaatctatttgttgctattgactctcatttgaacctatgcactattcagatattgtagaatctctg |
7414 |
T |
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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 44146925 - 44147155
Alignment:
| Q |
25 |
aatgctagctcagcacgttgaagctccaagtcagtgcagaaacttttcctgccacaaatttagtgcagagaagaaaatgaatcaacaagccggaaagttg |
124 |
Q |
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|||||||||| || |||| ||||||||| | |||||||||||||||||||| ||||||| | |||| ||||||||||||||||||| |||||| ||| |
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| T |
44146925 |
aatgctagctgagtgcgttcgagctccaagcccgtgcagaaacttttcctgcctcaaattttgcacagaaaagaaaatgaatcaacaagacggaaa-ttg |
44147023 |
T |
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| Q |
125 |
attgaagaataatta-------aacactaattcaacatagctagtatgaaatgcttcaaagatgtggtattacataacaccatcctccattatctgtgta |
217 |
Q |
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| T |
44147024 |
attgaggaataattaaccaattaacaataatccaacacagctagtattaaataattaaaagatgtaagattacatgatgccatcctccatcatctgtgta |
44147123 |
T |
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| Q |
218 |
-tact--aattgaatctatttgttgctattga |
246 |
Q |
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| T |
44147124 |
ctagttgaattgaatctatttgttgttattga |
44147155 |
T |
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