View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9557_high_31 (Length: 283)

Name: NF9557_high_31
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9557_high_31
NF9557_high_31
[»] chr2 (21 HSPs)
chr2 (1-271)||(39416014-39416284)
chr2 (9-271)||(39136438-39136700)
chr2 (29-271)||(39473950-39474192)
chr2 (54-271)||(39152055-39152272)
chr2 (54-271)||(39422187-39422404)
chr2 (134-271)||(39458366-39458503)
chr2 (118-271)||(39487953-39488105)
chr2 (71-168)||(39458511-39458608)
chr2 (30-87)||(39391055-39391112)
chr2 (157-267)||(39215086-39215196)
chr2 (29-87)||(39222309-39222367)
chr2 (29-103)||(39389761-39389835)
chr2 (200-271)||(39495387-39495458)
chr2 (116-267)||(38792263-38792413)
chr2 (9-87)||(39390581-39390659)
chr2 (36-87)||(39221889-39221940)
chr2 (36-87)||(39222099-39222150)
chr2 (36-95)||(39415161-39415220)
chr2 (9-95)||(39451450-39451536)
chr2 (9-86)||(39390161-39390238)
chr2 (29-85)||(38792567-38792623)
[»] chr7 (1 HSPs)
chr7 (1-271)||(19806799-19807069)
[»] chr5 (2 HSPs)
chr5 (136-245)||(17059024-17059133)
chr5 (32-87)||(33560312-33560367)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 39416014 - 39416284
Alignment:
1 cactcggtcttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttttgtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
39416014 cactcggtcttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctcattagactcaagctccttcatgcggcttttgtaa 39416113  T
101 tgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39416114 tgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaact 39416213  T
201 cttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgct 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39416214 cttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgct 39416284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 39136700 - 39136438
Alignment:
9 cttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttttgtaatgcatgtg 108  Q
    |||||||||||||||||||  ||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||| ||  |||||| | ||||| | ||    
39136700 cttcaaattctttttcttccaattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctg 39136601  T
109 ttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtc 208  Q
    || |||||||||||||||| | |||||||||||||||||||| |||||||| |||||||||||||||||  ||| |||||||||||||||||||||||||    
39136600 ttttgataccaaatcattcaccagctccttcacttggctttccaattccttttgttttgaaatgttatccatgacttgacgaagttccaactcttttgtc 39136501  T
209 ttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgct 271  Q
    || ||||||| |||| |||| | |||||| ||||||| ||||  |||||| ||||||||||||    
39136500 tttagttctttcttgtgctctccaatcaagtcctccatcaaaccgagctgcccttcctttgct 39136438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 29 - 271
Target Start/End: Original strand, 39473950 - 39474192
Alignment:
29 gattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattcc 128  Q
    |||| |||||||| || | ||||  |||| ||||||||||| |||| ||||| || |||||||||||   ||||| | |||| ||||||||||||||||     
39473950 gatttatgctcctccactcggccatcaagctgcttctcttttgacttaagcttctccatgcggctttcaaaatgcttctgttttgataccaaatcattca 39474049  T
129 ctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||| ||||||||  |||||||| ||||||||||||||||||||    
39474050 ctagctccttcacttggctttcaaattccttctgttttgaaatgttatccatgacttgacaaagttccatatcttttgtgttgagttcttgcttgcgctc 39474149  T
229 ccgaatcaattcctccaccaaatagagctgtccttcctttgct 271  Q
      ||||||||||||||||||||||||||||||| |||||||||    
39474150 ttgaatcaattcctccaccaaatagagctgtccatcctttgct 39474192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 54 - 271
Target Start/End: Complemental strand, 39152272 - 39152055
Alignment:
54 caagttgcttctctttagactcaagctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaa 153  Q
    ||||||| ||||||||||||||||| ||||| || |||||||   ||||| | ||||  ||||||||||||||| | |||||||| ||||||||||||||    
39152272 caagttgtttctctttagactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaa 39152173  T
154 ttccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatag 253  Q
    ||||||||||||||||||||||||  ||| || |||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| |||||||    
39152172 ttccttctgttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatag 39152073  T
254 agctgtccttcctttgct 271  Q
    ||||| ||||||||||||    
39152072 agctgcccttcctttgct 39152055  T

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Target: chr2; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 54 - 271
Target Start/End: Original strand, 39422187 - 39422404
Alignment:
54 caagttgcttctctttagactcaagctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaa 153  Q
    ||||||||||||||||||||||||| |||||||| |||||||   | ||| | |||| |||||||||||||||| | |||||   || ||||| ||| ||    
39422187 caagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattctccagctcggccaattggccttccaa 39422286  T
154 ttccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatag 253  Q
    |||||||||||||||||||| |||  ||| || ||||||||||| || |||||| |||||||||||||||||||| | |||||| |  |||| |||| ||    
39422287 ttccttctgttttgaaatgtcatccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttccatcaaagag 39422386  T
254 agctgtccttcctttgct 271  Q
    ||||||  ||||||||||    
39422387 agctgtgattcctttgct 39422404  T

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Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 39458503 - 39458366
Alignment:
134 tccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaa 233  Q
    ||||||||||| |||||||| | |||||||||||||||||||||  ||| |||| ||||||| | |||||||||||||||||||||||||||||| | ||    
39458503 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttgatgaagttctatctcttttgtcttgagttcttgcttgcgctctccaa 39458404  T
234 tcaattcctccaccaaatagagctgtccttcctttgct 271  Q
    |||| || |||| ||||||||| ||| |||||||||||    
39458403 tcaagtcttccatcaaatagagttgtgcttcctttgct 39458366  T

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Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 39487953 - 39488105
Alignment:
118 caaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttct 217  Q
    |||||||||| | ||||||||||  ||||||||||||| |||||||||||||||||||||  ||| || ||||||||||  ||||||||| | |||||||    
39487953 caaatcattcaccagctccttcatctggctttcaaatttcttctgttttgaaatgttatccatgacttcacgaagttccgtctcttttgtatcgagttct 39488052  T
218 tgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgct 271  Q
    |||||| || | | |||||| ||||||| |||||| ||||||||||||||||||    
39488053 tgcttgtgc-ctccaatcaagtcctccatcaaatatagctgtccttcctttgct 39488105  T

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Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 39458608 - 39458511
Alignment:
71 gactcaagctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttga 168  Q
    ||||||||||||||||| ||||||| | ||||| | |||| ||||| |||||||||| ||||||||||| | ||| ||||||||||||||| ||||||    
39458608 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctcttttga 39458511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 39391055 - 39391112
Alignment:
30 attcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcat 87  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||    
39391055 attcatgctccttcaattggccttcaagttgtttctctttggactcaagctccttcat 39391112  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 39215196 - 39215086
Alignment:
157 cttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagc 256  Q
    ||||| ||||||||||||| |  ||| ||||  |||||| | ||||||||||||||| |||||||||||||| | |||||| || |||| ||||||||||    
39215196 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 39215097  T
257 tgtccttcctt 267  Q
    |  ||||||||    
39215096 ttcccttcctt 39215086  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 39222367 - 39222309
Alignment:
29 gattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcat 87  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||    
39222367 gatttatgctccttcacttggccttcaagttgcttctctttagactcaaactccttcat 39222309  T

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Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 39389761 - 39389835
Alignment:
29 gattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttttgtaatgc 103  Q
    ||||||||||||| ||||||| || ||||||||||| |||| |||||||||||||||||  ||||||| ||||||    
39389761 gattcatgctcctgcaattggtcttcaagttgcttcccttttgactcaagctccttcatttggcttttataatgc 39389835  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 39495387 - 39495458
Alignment:
200 tcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgct 271  Q
    ||||||||||||||||||||||||||||| | |||||| || |||| |||| |||||||| ||| |||||||    
39495387 tcttttgtcttgagttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgctttgct 39495458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 267
Target Start/End: Complemental strand, 38792413 - 38792263
Alignment:
116 accaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagtt 215  Q
    |||||||||||| | |||||||||||||||||||| || | |||||| |||||||||| |||  ||| ||||  ||| |||  ||||||| |||  ||||    
38792413 accaaatcattcaccagctccttcacttggctttccaaatgcttctg-tttgaaatgtcatccatgacttgataaagctccttctcttttttctcaagtt 38792315  T
216 cttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctt 267  Q
    ||||| | ||||| | |||||| ||||||| |||| | |||| | |||||||    
38792314 cttgcctacgctctccaatcaagtcctccatcaaacatagctctacttcctt 38792263  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 39390581 - 39390659
Alignment:
9 cttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcat 87  Q
    ||||||||||| | ||||  |||||||||||||||| | ||| | || ||||||||||||| ||||||| |||||||||    
39390581 cttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttgactcaaactccttcat 39390659  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 39221940 - 39221889
Alignment:
36 gctccttcaattggcctccaagttgcttctctttagactcaagctccttcat 87  Q
    ||||||||| |||||   |||||||||||||||||||||||| |||||||||    
39221940 gctccttcacttggctatcaagttgcttctctttagactcaaactccttcat 39221889  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 39222150 - 39222099
Alignment:
36 gctccttcaattggcctccaagttgcttctctttagactcaagctccttcat 87  Q
    ||||||||| |||||   |||||||||||||||||||||||| |||||||||    
39222150 gctccttcacttggctatcaagttgcttctctttagactcaaactccttcat 39222099  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 39415161 - 39415220
Alignment:
36 gctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttt 95  Q
    ||||||||| | | ||| || ||||||||||||| ||||||||||||||||| |||||||    
39415161 gctccttcactcgaccttcatgttgcttctcttttgactcaagctccttcattcggcttt 39415220  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 39451536 - 39451450
Alignment:
9 cttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttt 95  Q
    ||||||| ||| ||||||  |||||||||||||||||  ||| | ||||||||||||| || || ||||| |||| ||| |||||||    
39451536 cttcaaactctctttcttttgattcatgctccttcaaccggctttcaagttgcttctcatttgagtcaaggtcctccatccggcttt 39451450  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 39390161 - 39390238
Alignment:
9 cttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttca 86  Q
    ||||||| ||| | |||| ||||||||||||||||| | ||| | || ||||||||||||| |||||||  |||||||    
39390161 cttcaaaatctctctctttggattcatgctccttcactcggctttcatgttgcttctcttttgactcaaaatccttca 39390238  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 38792623 - 38792567
Alignment:
29 gattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttc 85  Q
    ||||||||||||| ||  |||||| || ||||||||||||| |||||||| ||||||    
38792623 gattcatgctcctccacctggccttcatgttgcttctctttcgactcaagttccttc 38792567  T

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Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 19807069 - 19806799
Alignment:
1 cactcggtcttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcatgcggcttttgtaa 100  Q
    ||||||| |||||||||||| |||||| |||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||| ||  |||||| | ||    
19807069 cactcggccttcaaattcttgttcttctgattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaa 19806970  T
101 tgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaact 200  Q
    ||| | |||| ||||||||||||||||   ||||||||||| |||||||| |||||||| |||||||||||||||||  ||| |||| ||||||||||||    
19806969 tgcttctgttttgataccaaatcattcatcagctccttcacgtggctttccaattccttttgttttgaaatgttatccatgacttgatgaagttccaact 19806870  T
201 cttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgct 271  Q
    |||||||||| ||||||| ||||||||| | |||||| ||||||| ||||  |||||| ||||||||||||    
19806869 cttttgtctttagttctttcttgcgctctccaatcaagtcctccatcaaacggagctgcccttcctttgct 19806799  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 17059133 - 17059024
Alignment:
136 cttcacttggctttcaaattccttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatc 235  Q
    ||||| || ||||||||| | |||||||||||||||||||||  ||| ||||||||||||   ||||||||||  |||||||||||||||||| | ||||    
17059133 cttcaatttgctttcaaaatgcttctgttttgaaatgttatccatgacttgacgaagttctctctcttttgtcacgagttcttgcttgcgctctccaatc 17059034  T
236 aattcctcca 245  Q
    || |||||||    
17059033 aagtcctcca 17059024  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 33560367 - 33560312
Alignment:
32 tcatgctccttcaattggcctccaagttgcttctctttagactcaagctccttcat 87  Q
    |||||||| |||||| ||||| |||||||||||||||| |||| ||||||||||||    
33560367 tcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcat 33560312  T

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