View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_high_36 (Length: 254)
Name: NF9557_high_36
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_high_36 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: scaffold0667 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 3329 - 3084
Alignment:
| Q |
9 |
agtttggtgttaatgttttttcttgtttctgagatactgcttgttaatgtacccagttttctctcctcttgttaatggttttgatatggagtgaagcaac |
108 |
Q |
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| T |
3329 |
agtttgctgttaatgttttttcttgtttctgagatactgcttgttaatgtacccagttttctctcctcttgttaatggttttgatatggagtgaagcaac |
3230 |
T |
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| Q |
109 |
gttgctgaagttttaaagggtcgagcttgttattttgagctaagattaatgttgtattattatgaattcattttcaatttatccaatccaatatataaga |
208 |
Q |
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| T |
3229 |
gttgctgaagttttaaagggtcgagcttgttattttgagctaagattaatgttgtattattatgaattcattttcaatttatccaatccaatatataaga |
3130 |
T |
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| Q |
209 |
aattagttatcattgataattgggaacagagggattgtgtcaattt |
254 |
Q |
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| T |
3129 |
aattagttatcattgataattgggaacagagggattgtgtcaattt |
3084 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 34343591 - 34343522
Alignment:
| Q |
74 |
ctcttgttaatggttttgatatggagtgaagcaacgttgctgaagttttaaagggtcgagcttgttattt |
143 |
Q |
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| T |
34343591 |
ctcttgttaatgtttttgatatggagtgaagtgactttgctgaagttttaaagggccaagtttgttattt |
34343522 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 37279295 - 37279361
Alignment:
| Q |
77 |
ttgttaatggttttgatatggagtgaagcaacgttgctgaagttttaaagggtcgagcttgttattt |
143 |
Q |
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| T |
37279295 |
ttgttaatgtttttgatatggagtgaagtgactttgctgaagttttaaagggccgagttttttattt |
37279361 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 46420814 - 46420883
Alignment:
| Q |
74 |
ctcttgttaatggttttgatatggagtgaagcaacgttgctgaagttttaaagggtcgagcttgttattt |
143 |
Q |
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| T |
46420814 |
ctcttgttaatgtttttgatatggagtgaagtgactttgctgatgttttaaagggccaagtttgttattt |
46420883 |
T |
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