View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9557_high_53 (Length: 225)
Name: NF9557_high_53
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_high_53 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 31550116 - 31549924
Alignment:
| Q |
16 |
acaagaacatcatagcaatttctccataaaatttccagaatctttcaaaaccaaatcactaaccaaacacaaattcgtaatcacnnnnnnngatgatttc |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
31550116 |
acaagaacatcatagcaattttaccataaaatt-ccagaatctttcaaaaccaaatcactaatcaaacacaaattcataatcacaaaaa---atgatttc |
31550021 |
T |
|
| Q |
116 |
gttttcaaagcaacaaattctcaacagtataattcgaatcttccgtataccataacaaactcaacattacaaatccattgctactgttcataacacc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31550020 |
gttttcaaagcaacaaattctcaacagtagaattcgaatcttctgtataccataacaaactcaacattacaaatccattgctactgttcataacacc |
31549924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 15141121 - 15141312
Alignment:
| Q |
16 |
acaagaacatcatagcaatttctccataaaatttccagaatctttcaaaaccaaatcactaaccaaacacaaattcgtaatcacnnnnnnngatgatttc |
115 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
15141121 |
acaagaacatcatagaaatttcaccataaaatt-ccagaatctttcaaaaccaaatcactaaccaaacacaaattcataatcacaaaaa---atgatttc |
15141216 |
T |
|
| Q |
116 |
gttttcaaagcaacaaattctcaacagtataattcgaatcttccgtataccataacaaactcaacattacaaatccattgctactgttcataacac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15141217 |
attttcaaagcaacaaattctcaacagtagaattcgaattttccgtataccataacaaactcaacattacaaatccattgctactgttcataacac |
15141312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 21852025 - 21851834
Alignment:
| Q |
16 |
acaagaacatcatagcaatttctccataaaatttccagaatctttcaaaaccaaatcactaaccaaacacaaattcgtaatcacnnnnnnngatgatttc |
115 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
21852025 |
acaagaacatcatagaaatttcaccataaaatt-ccagaatctttcaaaaccaaatcactaaccaaacacaaattcataatcacaaaaa---atgatttc |
21851930 |
T |
|
| Q |
116 |
gttttcaaagcaacaaattctcaacagtataattcgaatcttccgtataccataacaaactcaacattacaaatccattgctactgttcataacac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21851929 |
attttcaaagcaacaaattctcaacagtagaattcgaattttccgtataccataacaaactcaacattacaaatccattgctactgttcataacac |
21851834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 21860460 - 21860269
Alignment:
| Q |
16 |
acaagaacatcatagcaatttctccataaaatttccagaatctttcaaaaccaaatcactaaccaaacacaaattcgtaatcacnnnnnnngatgatttc |
115 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
21860460 |
acaagaacatcatagaaatttcaccataaaatt-ccagaatctttcaaaaccaaatcactaaccaaacacaaattcataatcacaaaaa---atgatttc |
21860365 |
T |
|
| Q |
116 |
gttttcaaagcaacaaattctcaacagtataattcgaatcttccgtataccataacaaactcaacattacaaatccattgctactgttcataacac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21860364 |
attttcaaagcaacaaattctcaacagtagaattcgaattttccgtataccataacaaactcaacattacaaatccattgctactgttcataacac |
21860269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University