View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9557_low_1 (Length: 853)
Name: NF9557_low_1
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 767; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 20 - 843
Target Start/End: Original strand, 29208247 - 29209070
Alignment:
| Q |
20 |
aacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaatattggatacaatgacgctatata |
119 |
Q |
| |
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||||||||||||||| | |||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29208247 |
aacgctatagtgtaatagaatttgaacaaatcgttattgttccacgatacgctgtttagtacaaaatgttttgaaatagtggatacaatgacgctatata |
29208346 |
T |
|
| Q |
120 |
tagcaccgttgcgtagctgagtttgaacaaaaactattttttgcaattagaaattatgttagagggtactgnnnnnnntctaggtatctcaccattcctt |
219 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
29208347 |
tagcactgttgcgtagctgagtttgaacaaaaactattttttgcaattagcaattatgttagagggtactgaaaaaaatctaggtatctcaccattcctt |
29208446 |
T |
|
| Q |
220 |
tagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaattgcaaaagaaagtgaaacaat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29208447 |
tagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaaatgcaaaagaaagtgaaacaat |
29208546 |
T |
|
| Q |
320 |
taggacatagtattaattaactaagaggaagtagaacaaaactacattataaaaaattaatcactagtccaaccttcaaagtagatttagtgtttgctct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208547 |
taggacatagtattaattaactaagaggaagtagaacaaaactacattataaaaaattaatcactagtccaaccttcaaagtagatttagtgtttgctct |
29208646 |
T |
|
| Q |
420 |
ctccatgtttaagtggaataaatgtgtaactatgtaaccgttgttgaattgagggggctatataaagagtgagaaaagatgaagtttggaggttggtaac |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29208647 |
ctccatgtttaagtggaataaatgtgtaactatgtaaccgttgttgaattgagggggctatataaagagtgagaaaagatgaagtttggaggttggtaac |
29208746 |
T |
|
| Q |
520 |
tgtctgaaaaatttaatttaatttctgttgctacatcacaaacatgctctaggatttgcatgctctcttgcaccaaactttctgattaaatttccttctc |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29208747 |
tgtctgaaaaatttaatttaatttctgttgctacatcacaaacatgctctaggatttgcatgctctcttgcaccaaactttctgattaaatttccttctc |
29208846 |
T |
|
| Q |
620 |
aatcatatatttgtcaatccttattatgttccttcaaatttccacttagcttaagtgagggataatccatggttcacattaattaatccaatgtttattt |
719 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29208847 |
aatcatatatttgtcaatccttattatgttccttcaaatttccacttagcttaagtgagggataatccatggttcacattaattaatccaatgtttattt |
29208946 |
T |
|
| Q |
720 |
gcatgttgtatttgattctttggagaacactgaggtgtatccgtgtatgttatagttgattggaattcaataattttctatgctctattaagttttgttt |
819 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29208947 |
gcatgttgtatttgattctttggagaacactgaggtgtatccgtgtatgttatagttgattggaattcaataattttctatgctctattaagttttgttt |
29209046 |
T |
|
| Q |
820 |
tagaattaatgtttgttgtctctg |
843 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
29209047 |
tagaattaatgtttgttgtctctg |
29209070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 6e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 387 - 653
Target Start/End: Complemental strand, 38377782 - 38377513
Alignment:
| Q |
387 |
tccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatgtaac----cgttgttgaattgagggggctatat |
482 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||||||||||||| | ||||||||||||| | | |||| ||||| ||||| |||||| |
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|
| T |
38377782 |
tccaaccttcaaaacagattcagtgtttggtctctccatgtttaagtggacttgatgtgtaactatgcagctagtcgttattgaaca-aggggactatat |
38377684 |
T |
|
| Q |
483 |
aaa--gagtgagaaaagatgaagtttggaggttggtaactgtctgaaaaatttaat--ttaatttctgttgctacatcacaaacatgctctaggatttgc |
578 |
Q |
| |
|
| | ||||||||||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
38377683 |
atatagagtgagaaaatatgaagtttggaggttggtaactgtctgaaaggttcaatatttaatttctgttgctacatca---acatgctctaggatttgc |
38377587 |
T |
|
| Q |
579 |
atgctctcttgcaccaaactttctgattaaatttccttctcaatcatatatttgtcaatccttattatgttcctt |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
38377586 |
atgctctcttgcaccaaactttctgattaaatttccttctcaatcatatatttatcaatcc-tattatgttcctt |
38377513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 198 - 349
Target Start/End: Complemental strand, 38378240 - 38378088
Alignment:
| Q |
198 |
tctaggtatctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||| ||||||||||||||||| || |||||||||||||| |
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|
| T |
38378240 |
tctaggtatctcaccattcctttagaatcaataatactccaatgagatgaagactgtgaagtgttcttgacaaacttttcaccgcagaaaattaaggaaa |
38378141 |
T |
|
| Q |
298 |
ttgcaaa--agaaagtgaaacaattaggacatagtattaattaactaagaggaa |
349 |
Q |
| |
|
|||||| |||| | ||||||||||||| |||||||||||||| |||||||| |
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|
| T |
38378140 |
atgcaaagtagaatg-gaaacaattaggaattagtattaattaaccaagaggaa |
38378088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 13298529 - 13298575
Alignment:
| Q |
38 |
aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaa |
84 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
13298529 |
aatttgaacaaatcactattgttctgtgatatgctatttagtacaaa |
13298575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 2219599 - 2219538
Alignment:
| Q |
25 |
tatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaat |
86 |
Q |
| |
|
||||||||| | |||||||||| |||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
2219599 |
tatagtgtagtagaatttgaacatatcgttattgttctctgatatgctatttagtacaaaat |
2219538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 23117420 - 23117361
Alignment:
| Q |
38 |
aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaata |
97 |
Q |
| |
|
||||||||||||||| |||| ||| |||||||||| ||||| |||||||||| ||||||| |
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|
| T |
23117420 |
aatttgaacaaatcgctatttttccatgatatgctatttagcacaaaatgttgtgaaata |
23117361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 24672350 - 24672266
Alignment:
| Q |
23 |
gctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaatattggatacaa |
107 |
Q |
| |
|
||||||| |||||||||||| |||||| |||||||||||| ||| ||| ||||||||| ||| |||| ||||| ||| ||||| |
|
|
| T |
24672350 |
gctatagcataacataatttgcacaaatagttattgttctacaatacgctatttagtacataatattttcaaatagtggctacaa |
24672266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 23218681 - 23218630
Alignment:
| Q |
38 |
aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt |
89 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
23218681 |
aatttggacaaatcgtcattgttctatgatacgctatttaatacaaaatgtt |
23218630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 39647188 - 39647139
Alignment:
| Q |
38 |
aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatg |
87 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
39647188 |
aatttgaacaaatcgttattgttctgcgatatgctatttagtacaaaatg |
39647139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 8928459 - 8928401
Alignment:
| Q |
39 |
atttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaata |
97 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||| ||||||||||||| || ||||||| |
|
|
| T |
8928459 |
atttgaacaaatcgctattgttcgatgatacgctatttagtacaaaatattctgaaata |
8928401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 11257713 - 11257779
Alignment:
| Q |
23 |
gctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt |
89 |
Q |
| |
|
||||||||||| | ||| ||||||||||| ||||||| || |||||||| |||||||||||||||| |
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|
| T |
11257713 |
gctatagtgtagcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgtt |
11257779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 39647289 - 39647243
Alignment:
| Q |
38 |
aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaa |
84 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
39647289 |
aatttgaataaatcgttattgttctgcgatatgctgtttagcacaaa |
39647243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 33651641 - 33651706
Alignment:
| Q |
24 |
ctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt |
89 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||||||||| ||||||| ||||||| |||||||| |
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|
| T |
33651641 |
ctatagtgtagcagtattcgaacaaatcgttattgttctacaatatgctatttagtataaaatgtt |
33651706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 6026031 - 6025980
Alignment:
| Q |
38 |
aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt |
89 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
6026031 |
aatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgtt |
6025980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 2732936 - 2732987
Alignment:
| Q |
38 |
aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt |
89 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||| |||||||||||||||| |
|
|
| T |
2732936 |
aatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgtt |
2732987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 17333566 - 17333528
Alignment:
| Q |
23 |
gctatagtgtaacataatttgaacaaatcgttattgttc |
61 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
17333566 |
gctatagtgtagcgtaatttgaacaaatcgttattgttc |
17333528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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