View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_10 (Length: 585)
Name: NF9557_low_10
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 37653320 - 37653644
Alignment:
| Q |
17 |
aagttcaaatcatcaccttagtgagtatagtttccaatttacatgtaaaagaaaatccacaaacctaggtaaagatgttaaaggtaaccatctatattgc |
116 |
Q |
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| T |
37653320 |
aagttcaaatcatcacctgagtgagtatagtttccaatttacatgtaaaagaaaatccacaaacctaggtaaagatgttaaaggtaaccatctatattgc |
37653419 |
T |
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| Q |
117 |
taggaaacttcgactacttcacccatacataataaataaatcattggatatatgtggcgataataacaatttgaagaatgactttgatccagtggcagag |
216 |
Q |
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| T |
37653420 |
taggaaacttcgactacttcacccatacataataaataaatcattggatatatgtggcgataataacaatttgaagaatgacttcgatccagtggcagag |
37653519 |
T |
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| Q |
217 |
ggaagaactacatgtccatcatcatgattctaaattcatagaaatcaattctgccatcaccatcggtgtcaacgcagccgatcattcttccacatttggc |
316 |
Q |
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| T |
37653520 |
ggaagaactacatgtccatcatcatgattctaaattcatcgaaatcaattctgccatcaccatcggtgtcaacgcagcctatcattcttccacatttggc |
37653619 |
T |
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| Q |
317 |
caaggagcactcttcaccaaagctt |
341 |
Q |
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| T |
37653620 |
caaggagcactcttcaccaaagctt |
37653644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 233 - 493
Target Start/End: Original strand, 37655371 - 37655631
Alignment:
| Q |
233 |
catcatcatgattctaaattcatagaaatcaattctgccatcaccatcggtgtcaacgcagccgatcattcttccacatttggccaaggagcactcttca |
332 |
Q |
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| T |
37655371 |
catcatcatgattctaaaatcctcaaaatcaatcctaccatcaccatcactatcaacgcgaccaataattctttcacattcatccaaggaacactcttga |
37655470 |
T |
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| Q |
333 |
ccaaagcttttcataaccgtattgagctcctccacggtgatgaaaccgtcaccatcaatgtcaaaaacatcaaaggcgttttttatgttttctatgtcct |
432 |
Q |
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| T |
37655471 |
ccaatgcttctcataagcgtgttaagctccttcgccgtgatgaaaccatcgccatcaatgtcatacacagaaaacgtgctctttaggttttctatttcct |
37655570 |
T |
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| Q |
433 |
cttcagtttcagatttcgtggtgcttagctcaataaactcttggagtgtgataaatcctcc |
493 |
Q |
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|||||| |||| | | || ||||||||||||||||||||||| || |||||| ||||||| |
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| T |
37655571 |
cttcagattcatagcttgttgtgcttagctcaataaactcttgaagcgtgatagatcctcc |
37655631 |
T |
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