View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_11 (Length: 489)
Name: NF9557_low_11
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 15115337 - 15115798
Alignment:
| Q |
18 |
acaagagcgaaccaaggaggaatcatgtgcgaacgtgcgatgtgagcaatataacgcgcttgtcctaatcttcctactaaaagcactgttgtcatacctt |
117 |
Q |
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| T |
15115337 |
acaagagcgaaccaaggaggaatcatgtgcgaacgtgcgatgtgagcaatataacgcgcttgtcctaatcttcctactaaaagcactgttgtcatacctt |
15115436 |
T |
|
| Q |
118 |
tcaatgcaccaaaagctactacatattttgcccaattcattccaactttctgaaatgcaactgagaaagctgcacctgtatctatatctgtgtatttctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15115437 |
tcaatgcaccaaaagctactacatattttgcccaattcattccaactttctgaaatgcaactgagaaagctgcacctgtatctatatctgtgtatttctg |
15115536 |
T |
|
| Q |
218 |
catcatgcttagtgaaagtgccatcaagcaatagataactgtgatcacagacattgaaccaatcaagcctattggtatgtcctttggcggatttttagtt |
317 |
Q |
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| T |
15115537 |
catcatgcttagtgaaagtgccatcaagcaatagataactgtgatcacagacattgaaccaatcaagcctattggtatgtcctttggcggatttttagtt |
15115636 |
T |
|
| Q |
318 |
tcttcagccatggttgcaagactgtcaaaccctccatatgcaaaatatagaattgcagatgcttgaaatacacctttaactccataaggtaaaaaaggtg |
417 |
Q |
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| T |
15115637 |
tcttcagccatggttgcaagactgtcaaaccctccatatgcaaaatatagaattgcagatgcttgaaatacacctttaactccataaggtaaaaaaggtg |
15115736 |
T |
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| Q |
418 |
tcaagtttgatgtatttgcatgagaaaaccctgcaacgattacgaatatgattacacctatg |
479 |
Q |
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| T |
15115737 |
tcaagtttgatgtatttgcatgagaaaatcctgcaacgattacgaatatgattacacctatg |
15115798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 336
Target Start/End: Original strand, 21597281 - 21597381
Alignment:
| Q |
236 |
tgccatcaagcaatagataactgtgatcacagacattgaaccaatcaagcctattggtatgtcctttggcggatttttagtttcttcagccatggttgca |
335 |
Q |
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||||||||| ||||| ||||| ||||||| ||||||||||||||| || || || ||||| || | | || |||||||||||||||||||| |||||| |
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| T |
21597281 |
tgccatcaaacaataaataaccgtgatcatagacattgaaccaattaaaccaataggtatatctctagaagggtttttagtttcttcagccatagttgca |
21597380 |
T |
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| Q |
336 |
a |
336 |
Q |
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| T |
21597381 |
a |
21597381 |
T |
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