View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9557_low_115 (Length: 248)
Name: NF9557_low_115
Description: NF9557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9557_low_115 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 37025023 - 37024775
Alignment:
| Q |
1 |
attccacataattctatcactaatattaataacacatgcatctagttag----atagctggtgcatgtgccacaccttaattagcggggggacccttagt |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37025023 |
attccacataattctatcactaatattaataacacatgcatctagttagttagatagctggtgcatgtgccacaccttaattagcggggggacccttagt |
37024924 |
T |
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| Q |
97 |
ttcctattaacttcttcttccatacgattacaactttagaatataccaccaatgttcatattttctattccatttctttcacaataatgacccttgagga |
196 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37024923 |
ttcctattaacttcttc---catacgattactactttagaatataccaccaatgttcatattttctattccatttctttcacaataacgacccttgagga |
37024827 |
T |
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| Q |
197 |
agctgatgcatagtctcttccatgcctccttatctggctcccacataccagc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37024826 |
agctgatgcatagtctcttccatgcctccttatctggctcccacataccagc |
37024775 |
T |
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